Merge branch 'main' into development

sannalda · Feb 6, 2024 · b667180 · b667180
2 parents 81149d7 + cef2b1b
commit b667180
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Showing 2 changed files with 1 addition and 3 deletions.
diff --git a/config/config.yaml b/config/config.yaml
@@ -14,8 +14,6 @@ samples:
     #SRR17032105: /scratch/sjannalda/projects/PlastidPipelineTesting/rawdata/SRR17032105/SRR17032105
     #SRR12432532: /scratch/sjannalda/projects/PlastidPipelineTesting/rawdata/SRR12432532/SRR12432532
 
-
-
 ### Pipeline Options
 Trimming: TRUE
 Standardization: TRUE

diff --git a/workflow/rules/Processing.smk b/workflow/rules/Processing.smk
@@ -2,7 +2,7 @@ def sortReadsInputFunc(wildcards):
 	if (config["Trimming"]):
 		return "{sample}/data/{sample}_{read}.trimmed.fastq"
 	else:
-		return lambda wildcards: f"{config['samples'][wildcards.sample]}_{wildcards.read}.fastq"
+		return f"{config['samples'][wildcards.sample]}_{wildcards.read}.fastq"
 
 rule SortReads:
 	input: