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Cleanup and rework #85

Merged
merged 37 commits into from
Jul 19, 2024
Merged

Cleanup and rework #85

merged 37 commits into from
Jul 19, 2024

Commits on Oct 2, 2017

  1. createCompletePar documentation update

    @TankredO
    TankredO committed Oct 2, 2017
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  2. code reformatting

    @TankredO
    TankredO committed Oct 2, 2017
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  3. removed unused variable

    @TankredO
    TankredO committed Oct 2, 2017
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  4. refactoring

    @TankredO
    TankredO committed Oct 2, 2017
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Commits on Oct 4, 2017

  1. Added documentation and error checking to parCreator

    @TankredO
    TankredO committed Oct 4, 2017
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  2. changed name of m_Variance to m_nicheWidth

    @TankredO
    TankredO committed Oct 4, 2017
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  3. Added utility functions

    @TankredO
    TankredO committed Oct 4, 2017
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  4. reformatting and comments

    @TankredO
    TankredO committed Oct 4, 2017
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Commits on Oct 5, 2017

  1. added manual test for environment parameter

    @TankredO
    TankredO committed Oct 5, 2017
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  2. Added Documentation and renamed variables 

    Added documentation to parCreator for the case of a runs argument in form of a vector. Also changed the variable names of the corresponding variables in the cpp code to make clearer what's happening. Also Added some comments.
    @TankredO
    TankredO committed Oct 5, 2017
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  3. Bug fix in Grid.speciation

    @TankredO
    TankredO committed Oct 5, 2017
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Commits on Oct 7, 2017

  1. spelling corrections

    @TankredO
    TankredO committed Oct 7, 2017
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Commits on Oct 13, 2017

  1. added analysis tools 

    I don't really know if those should be in the package. If we want to
keep them for later, those should be made a little bit cleaner.
    @TankredO
    TankredO committed Oct 13, 2017
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Commits on Oct 14, 2017

  1. pipeline additions

    @TankredO
    TankredO committed Oct 14, 2017
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Commits on Oct 17, 2017

  1. No idea why, but my compiler complains about >> and wants > >

    @florianhartig
    florianhartig committed Oct 17, 2017
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  2. rejection sampling for pipeline

    @TankredO
    TankredO committed Oct 17, 2017
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  3. added error handling for calculateChunkwiseSummaries

    @TankredO
    TankredO committed Oct 17, 2017
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Commits on Oct 18, 2017

  1. vignette fix

    @TankredO
    TankredO committed Oct 18, 2017
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Commits on Nov 14, 2017

  1. summary statistics additions

    @TankredO
    TankredO committed Nov 14, 2017
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Commits on Nov 15, 2017

  1. refactoring

    @TankredO
    TankredO committed Nov 15, 2017
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Commits on Nov 20, 2017

  1. new summaries

    @TankredO
    TankredO committed Nov 20, 2017
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Commits on Jul 18, 2019

  1. Update DESCRIPTION

    florianhartig committed Jul 18, 2019
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  2. Merge branch 'cleanupAndRework' of https://github.com/biometry/phylosim… 

    … into cleanupAndRework
    florianhartig committed Jul 18, 2019
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Commits on Jul 22, 2019

  1. small updates

    florianhartig authored and florianhartig committed Jul 22, 2019
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Commits on Oct 18, 2020

  1. updates

    @florianhartig
    florianhartig committed Oct 18, 2020
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Commits on Jan 26, 2021

  1. tree metrics

    @florianhartig
    florianhartig committed Jan 26, 2021
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Commits on Feb 10, 2021

  1. Update summaryFunctions.R

    @florianhartig
    florianhartig committed Feb 10, 2021
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Commits on Nov 19, 2021

  1. Update runSimulationBatch.R

    @florianhartig
    florianhartig committed Nov 19, 2021
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Commits on Jan 19, 2024

  1. Merge branch 'master' into cleanupAndRework

    @florianhartig
    florianhartig committed Jan 19, 2024
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  2. updated rd files

    @florianhartig
    florianhartig committed Jan 19, 2024
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Commits on Jul 5, 2024

  1. Merge branch 'cleanupAndRework' of https://github.com/TheoreticalEcol… 

    …ogy/phylosim into cleanupAndRework
    @florianhartig
    florianhartig committed Jul 5, 2024
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Commits on Jul 19, 2024

  1. Merge branch 'master' into cleanupAndRework

    @florianhartig
    florianhartig committed Jul 19, 2024
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  2. updates

    @florianhartig
    florianhartig committed Jul 19, 2024
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  3. Update DESCRIPTION

    @florianhartig
    florianhartig committed Jul 19, 2024
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  4. updates

    @florianhartig
    florianhartig committed Jul 19, 2024
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  5. Merge branch 'master' into cleanupAndRework

    @florianhartig
    florianhartig committed Jul 19, 2024
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  6. Create unnamed-chunk-2-1.png

    @florianhartig
    florianhartig committed Jul 19, 2024
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