92_boundsPostprob

[audreyyeoCH]

closes #92

[github-actions]

🧪 Test coverage: 65.25%

Code Coverage Summary

Filename                 Stmts    Miss  Cover    Missing
---------------------  -------  ------  -------  ----------------------------------
R/betadiff.R                59       0  100.00%
R/boundsPostprob.R          39       0  100.00%
R/boundsPredprob.R          28      28  0.00%    36-73
R/dbetabinom.R              57       3  94.74%   32, 62, 129
R/oc2.R                    162     162  0.00%    93-326
R/oc3.R                    146     146  0.00%    91-308
R/ocPostprob.R              99       4  95.96%   239-242
R/ocPostprobDist.R         109       0  100.00%
R/ocPredprob.R             182       4  97.80%   285-288
R/ocPredprobDist.R         235       3  98.72%   346-348
R/ocRctPostprobDist.R      154       4  97.40%   236-239
R/ocRctPredprobDist.R      283      55  80.57%   207-222, 225-240, 373-376, 403-421
R/plotBeta.R               107     107  0.00%    16-174
R/plotBounds.R              52      52  0.00%    33-90
R/plotDecision.R            79      79  0.00%    16-136
R/plotOc.R                  15      15  0.00%    16-36
R/postprob.R                29       1  96.55%   99
R/postprobDist.R            78       1  98.72%   208
R/predprob.R                24       0  100.00%
R/predprobDist.R           140       1  99.29%   269
R/runShinyPhase1b.R          4       4  0.00%    8-13
R/sumbetadiff.R             63      63  0.00%    24-101
R/sumTable.R                20      20  0.00%    25-48
TOTAL                     2164     752  65.25%

Diff against main

Filename              Stmts    Miss  Cover
------------------  -------  ------  --------
R/boundsPostprob.R       +8     -31  +100.00%
TOTAL                    +8     -31  +1.57%

Results for commit: 9b94bba

Minimum allowed coverage is 80%

♻️ This comment has been updated with latest results

[github-actions]

Unit Tests Summary

    1 files     15 suites   11m 45s ⏱️
  113 tests   112 ✅ 0 💤 0 ❌ 1 🔥
1 233 runs  1 232 ✅ 0 💤 0 ❌ 1 🔥

For more details on these errors, see this check.

Results for commit c59c148.

♻️ This comment has been updated with latest results.

[github-actions]

Unit Test Performance Difference

Test Suite	$Status$	Time on main	$±Time$	$±Tests$	$±Skipped$	$±Failures$	$±Errors$
boundsPostProb	👶		$+0.06$	$+8$	$0$	$0$	$0$
boundsPredprob	👶		$+0.02$	$+1$	$0$	$0$	$+1$
ocPostprob	💔	$23.23$	$+31.09$	$0$	$0$	$0$	$0$
ocPostprobDist	💔	$0.46$	$+1.69$	$0$	$0$	$0$	$0$
ocPredprob	💔	$3.96$	$+4.67$	$0$	$0$	$0$	$0$
ocPredprobDist	💔	$49.13$	$+405.24$	$0$	$0$	$0$	$0$
ocRctPostprobDist	💔	$0.65$	$+2.46$	$0$	$0$	$0$	$0$
ocRctPredprobDist	💔	$27.20$	$+144.70$	$0$	$0$	$0$	$0$
predprobDist	💔	$1.14$	$+8.43$	$0$	$0$	$0$	$0$

Additional test case details

Test Suite	$Status$	Time on main	$±Time$	Test Case
boundsPostProb	👶		$+0.06$	boundsPostProb_gives_correct_result_and_list
boundsPredprob	👶		$+0.02$	boundsPredprob_gives_correct_result_and_list
dbetabinom	💀	$0.01$	$-0.01$	dbetaMix_handles_edge_cases
dbetabinom	💀	$0.01$	$-0.01$	pbetaMix_works_for_edge_cases
ocPostprob	💔	$8.61$	$+12.45$	ocPostprob_gives_results_that_are_within_range_to_stats_pbinom
ocPostprob	💔	$4.57$	$+7.29$	the_PrEfficacy_increases_with_increase_Efficacy_looks
ocPostprob	💔	$5.19$	$+8.49$	the_PrFutility_increases_with_increase_futility_looks
ocPostprob	💔	$1.83$	$+2.52$	the_sum_of_Eff_Fut_Gray_zone_probabiliy_is_1
ocPredprob	💔	$3.54$	$+4.27$	the_PrEfficacy_increases_with_increase_Efficacy_looks
ocPredprobDist	💔	$12.71$	$+97.06$	ocPredprobDist_gives_correct_result_and_list_when_relativeDelta_FALSE
ocPredprobDist	💔	$13.26$	$+112.91$	ocPredprobDist_gives_correct_result_and_list_when_relativeDelta_TRUE
ocPredprobDist	💔	$5.19$	$+43.78$	ocPredprobDist_gives_higher_PrEfficacy_with_more_efficacy_looks
ocPredprobDist	💔	$17.95$	$+151.47$	ocPredprobDist_gives_higher_PrFutility_with_more_futility_looks
ocRctPostprobDist	💔	$0.26$	$+1.22$	ocRctPostprobDist_gives_higher_PrFutility_with_decreased_pE
ocRctPredprobDist	💔	$10.85$	$+57.71$	ocRctPredprobDist_gives_higher_PrEfficacy_with_increased_pE
ocRctPredprobDist	💔	$10.85$	$+57.65$	ocRctPredprobDist_gives_higher_PrFutility_with_decreased_pE
ocRctPredprobDist	💔	$5.44$	$+29.32$	the_sum_of_Eff_Fut_Gray_zone_probability_is_1
postprob	💀	$0.01$	$-0.01$	postprob_works_with_vector_x
postprobDist	💀	$0.01$	$-0.01$	postprobDist_works_with_vector_x
predprobDist	💔	$0.20$	$+1.39$	h_predprobdist_gives_correct_list
predprobDist	💔	$0.32$	$+2.53$	h_predprobdist_gives_higher_predictive_probability_when_thetaT_is_lower
predprobDist	💔	$0.32$	$+2.54$	predprobDist_gives_higher_predictive_probability_when_thetaT_is_lower_in_a_single_arm_trial
predprobDist	💔	$0.17$	$+1.28$	predprobDist_gives_the_correct_results_in_a_two_arm_study

Results for commit fa97300

♻️ This comment has been updated with latest results.

[audreyyeoCH]

Hi @danielinteractive , git checks are running but ready for a review, thanks!

[danielinteractive]

Thanks @audreyyeoCH

[audreyyeoCH]

Hi @danielinteractive it's running git checks now, could you review please ?

[audreyyeoCH]

Just realised that this does not accept beta-mixtures, but can facilitate, will be added to current issue.