[pre-commit.ci] pre-commit autoupdate (#268)

* [pre-commit.ci] pre-commit autoupdate

updates:
- [github.com/astral-sh/ruff-pre-commit: v0.4.4 → v0.5.0](astral-sh/ruff-pre-commit@v0.4.4...v0.5.0)
- [github.com/adamchainz/blacken-docs: 1.16.0 → 1.18.0](adamchainz/blacken-docs@1.16.0...1.18.0)
- [github.com/tox-dev/pyproject-fmt: 2.0.4 → 2.1.3](tox-dev/pyproject-fmt@2.0.4...2.1.3)

* Update Pyproject formatting

* Reformat remove 3.9 upstream tests

* Add new Zarr requirement

* More new Zarr requirements

* Gahh, even more new Zarr requirements

* Remove Zarr from upstream tests and pin to less than 3

* Fully remove upstream Zarr line

---------

Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
Co-authored-by: Alex Kerney <abk@mac.com>

.github/workflows/main.yaml

@@ -12,7 +12,7 @@ jobs:
     runs-on: ubuntu-latest
     strategy:
       matrix:
-        python-version: ["3.9", "3.10", "3.11", "3.12"]
+        python-version: ["3.10", "3.11", "3.12"]
         pydantic-version: ["<2", ">=2"]
     steps:
       - uses: actions/checkout@v4
@@ -56,7 +56,7 @@ jobs:
     runs-on: ubuntu-latest
     strategy:
       matrix:
-        python-version: ["3.9", "3.10", "3.11", "3.12"]
+        python-version: ["3.10", "3.11", "3.12"]
     steps:
       - uses: actions/checkout@v4
 

.pre-commit-config.yaml

@@ -10,7 +10,7 @@ repos:
       - id: double-quote-string-fixer
 
   - repo: https://github.com/astral-sh/ruff-pre-commit
-    rev: "v0.4.4"
+    rev: "v0.5.0"
     hooks:
       - id: ruff
         args: [--fix, --exit-non-zero-on-fix]
@@ -23,7 +23,7 @@ repos:
           - mdformat-myst
 
   - repo: https://github.com/adamchainz/blacken-docs
-    rev: "1.16.0"
+    rev: "1.18.0"
     hooks:
       - id: blacken-docs
         additional_dependencies:
@@ -43,7 +43,7 @@ repos:
           - markdown # managed by mdformat
 
   - repo: https://github.com/tox-dev/pyproject-fmt
-    rev: "2.0.4"
+    rev: "2.1.3"
     hooks:
       - id: pyproject-fmt
 

pyproject.toml

@@ -65,58 +65,57 @@ skip-string-normalization = true
 [tool.ruff]
 line-length = 100
 
-[tool.ruff.lint]
-select = [
+lint.select = [
   "B", # flake8-bugbear
-  "C",
-  'D', # pydocstyle
-  "E", # pycodestyle
-  "F", # Pyflakes
-  "I", # isort
-  "W", # pycodestyle
   # "T4",
   "B9",
+  "C",
+  "D",  # pydocstyle
+  "E",  # pycodestyle
+  "F",  # Pyflakes
+  "I",  # isort
+  "W",  # pycodestyle
 ]
-ignore = [
+lint.ignore = [
+  "C901",
   "D100", # Missing docstring in public module
-  "D107", # Missing docstring in `__init__`
   "D104", # Missing docstring in public package
   "D105", # Missing docstring in magic method
+  "D107", # Missing docstring in `__init__`
+  "E402",
   # "E203",
   # "E266",
   "E501",
   # "W503",
   "E722",
-  "E402",
-  "C901",
 ]
-exclude = [
-  "tests/",
+lint.exclude = [
   "docs/",
+  "tests/",
 ]
-
-[tool.ruff.lint.per-file-ignores]
-"tests/*" = [
+lint.per-file-ignores."docs/*" = [
+  "D101", # missing docstring in public class
+  "D102", # missing docstring in public method
+  "D103", # missing docstring in public function
+]
+lint.per-file-ignores."tests/*" = [
   "D103", # Missing docstring in public function
   "D205", # blank line between summary and description
   "D415", # first line should end with punctuation
 ]
-"docs/*" = [
-  "D101", # missing docstring in public class
-  "D102", # missing docstring in public method
-  "D103", # missing docstring in public function
+# Allow fastapi.Depends and other dependency injection style function arguments
+lint.flake8-bugbear.extend-immutable-calls = [
+  "fastapi.Depends",
+  "fastapi.Path",
+  "fastapi.Query",
 ]
-
-[tool.ruff.lint.mccabe]
-# Unlike Flake8, default to a complexity level of 10.
-max-complexity = 18
-
-[tool.ruff.lint.isort]
-combine-as-imports = true
-known-first-party = [
+lint.flake8-quotes.docstring-quotes = "double"
+lint.flake8-quotes.inline-quotes = "single"
+lint.isort.combine-as-imports = true
+lint.isort.known-first-party = [
   "xpublish",
 ]
-known-third-party = [
+lint.isort.known-third-party = [
   "cachey",
   "dask",
   "fastapi",
@@ -134,22 +133,10 @@ known-third-party = [
   "xarray",
   "zarr",
 ]
-
-[tool.ruff.lint.pydocstyle]
+# Unlike Flake8, default to a complexity level of 10.
+lint.mccabe.max-complexity = 18
 # Use Google style docstrings
-convention = "google"
-
-[tool.ruff.lint.flake8-quotes]
-inline-quotes = "single"
-docstring-quotes = "double"
-
-[tool.ruff.lint.flake8-bugbear]
-# Allow fastapi.Depends and other dependency injection style function arguments
-extend-immutable-calls = [
-  "fastapi.Depends",
-  "fastapi.Query",
-  "fastapi.Path",
-]
+lint.pydocstyle.convention = "google"
 
 [tool.pytest.ini_options]
 log_cli = true