Here are
35 public repositories
matching this topic...
Tibanna helps you run your genomic pipelines on Amazon cloud (AWS). It is used by the 4DN DCIC (4D Nucleome Data Coordination and Integration Center) to process data. Tibanna supports CWL/WDL (w/ docker), Snakemake (w/ conda) and custom Docker/shell command.
Updated
Aug 6, 2024
Python
Bioinformatics workflows developed for and used on the St. Jude Cloud project.
A command-line tool for executing, managing, and querying WDL workflows on Cromwell servers.
Updated
Aug 17, 2018
Python
Rust crates for working with Workflow Description Language (WDL) documents.
Updated
Sep 20, 2024
Rust
Create WDL documentation using Markdown.
Updated
Sep 16, 2024
Python
Command line tool to run batch jobs concurrently with ETL framework on AWS or other cloud computing resources
WDL tasks for commonly used BFX tools
Workflow for metagenome assembly
[Experimental] Workflow Definition Language (WDL) to CWL
Updated
Nov 17, 2021
Python
Broad fungal method repository
Request for Comments (RFCs) on the St. Jude Cloud Project.
Updated
Sep 5, 2024
Jupyter Notebook
WDL pipelines for the Sentieon tools
An opinionated Cromwell orchestration manager.
Updated
Mar 27, 2023
Python
Pipeline to characterize Human Endogenous Retrovirus (HERV) expression
Updated
Jan 23, 2024
Shell
A collection of tasks wrapped in WDL
Variant Calling and Annotation using PacBio Hi-Fi Reads
A workflow for processing metagenomics data sets using Centrifuge. Category:Single-Sample
Self-contained WDL workflow that converts a WGS FASTQ file into an unmapped CRAM file
A package manager for Workflow Description Language files.
Updated
Sep 16, 2024
Rust
Bioinformatics workflows developed for and used on the St. Jude Cloud project.
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