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35 public repositories
matching this topic...
Tibanna helps you run your genomic pipelines on Amazon cloud (AWS). It is used by the 4DN DCIC (4D Nucleome Data Coordination and Integration Center) to process data. Tibanna supports CWL/WDL (w/ docker), Snakemake (w/ conda) and custom Docker/shell command.
Updated
Aug 6, 2024
Python
An opinionated Cromwell orchestration manager.
Updated
Mar 27, 2023
Python
Bioinformatics workflows developed for and used on the St. Jude Cloud project.
Command line tool to run batch jobs concurrently with ETL framework on AWS or other cloud computing resources
[Experimental] Workflow Definition Language (WDL) to CWL
Updated
Nov 17, 2021
Python
Create WDL documentation using Markdown.
Updated
Sep 16, 2024
Python
A package manager for Workflow Description Language files.
Updated
Sep 16, 2024
Rust
Rust crates for working with Workflow Description Language (WDL) documents.
Updated
Sep 20, 2024
Rust
A command-line tool for executing, managing, and querying WDL workflows on Cromwell servers.
Updated
Aug 17, 2018
Python
WDL pipelines for the Sentieon tools
Broad fungal method repository
WDL tasks for commonly used BFX tools
Workflow for metagenome assembly
A pipeline for mitochondrial mutation calling
Updated
Jun 19, 2020
HTML
Pipeline to characterize Human Endogenous Retrovirus (HERV) expression
Updated
Jan 23, 2024
Shell
A cloud-based pipeline to estimate telomere lengths from WGS data using Telseq
WDL workflow language program, developed for singlecell rna sequencing data analysis, maintained by @OOAAHH (SunHao) .
A workflow for processing metagenomics data sets using Centrifuge. Category:Single-Sample
RNA binding workflow geared towards broad discovery of binding sites
A collection of tasks wrapped in WDL
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