Python code that I used in my blog posts on the Zarr file format.
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Updated
Oct 24, 2022 - Python
Python code that I used in my blog posts on the Zarr file format.
Fractal tasks for the Opera/Operetta microscope and drug profiling
Large-scale cell segmentation with cellpose.
Course materials for the practical on the Defragmentation Training School 2 - Porto, 8-12 May 2023
Converter from the Lif files (Leica Microscope) to OME-Zarr format.
Package for working with OME-Zarr and NIFTI images in a unified manner, with a focus on spatial transformations
Run encapsulated docker containers with BioFormats2Raw in the Amazon Web Services infrastructure.
A nextflow based tool that wraps bfconvert and bioformats2raw to convert image data collections to OME-TIFF and OME-Zarr, respectively, in a parallelised manner.
A lean and kind Open Microscopy Environment (OME) Next Generation File Format (NGFF) Zarr implementation.
ITK IO for images stored in OME-Zarr format.
A collection of Image Processing and Analysis (IPA) functions used at the Facility for Advanced Imaging and Microscopy (FAIM)
Main tasks for the Fractal analytics platform
Add a description, image, and links to the ome-zarr topic page so that developers can more easily learn about it.
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