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@JaneliaSciComp

Howard Hughes Medical Institute

GitHub organization maintained by Scientific Computing Software at HHMI's Janelia Research Campus for use by HHMI staff and external collaborators.

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  1. bigstream bigstream Public

    Tools for distributed alignment of massive images

    Jupyter Notebook 74 21

  2. NIDAQ.jl NIDAQ.jl Public

    National Instruments Data Acquisition Interface

    Julia 47 16

  3. JRCLUST JRCLUST Public

    JRCLUST

    MATLAB 34 22

  4. multifish multifish Public

    EASI-FISH analysis pipeline for spatial transcriptomics

    Jupyter Notebook 32 13

  5. xarray-multiscale xarray-multiscale Public

    scalable multiscale image pyramids in python

    Python 26 3

  6. SharkViewer SharkViewer Public

    SharkViewer is a web-based viewer for SWC neuron files. It is written entirely in JavaScript using Three.js.

    JavaScript 24 11

Repositories

Showing 10 of 264 repositories
  • ShroffCelegansModels.jl Public
    JaneliaSciComp/ShroffCelegansModels.jl’s past year of commit activity
    Julia 2 MIT 0 0 32 Updated Sep 20, 2024
  • tethered-fly-pipeline Public

    Nextflow pipeline for processing tethered fly videos using APT

    JaneliaSciComp/tethered-fly-pipeline’s past year of commit activity
    Nextflow 0 GPL-3.0 0 0 0 Updated Sep 19, 2024
  • G4_Display_Tools Public

    Collection of tools for the G4 LED arena displays.

    JaneliaSciComp/G4_Display_Tools’s past year of commit activity
    MATLAB 2 CC-BY-4.0 2 11 0 Updated Sep 19, 2024
  • neuronbridge-precompute Public

    Utilities for indexing and transferring of NeuronBridge-related files

    JaneliaSciComp/neuronbridge-precompute’s past year of commit activity
    Python 0 BSD-3-Clause 0 0 0 Updated Sep 19, 2024
  • neuronbridge Public

    EM/LM neuron search

    JaneliaSciComp/neuronbridge’s past year of commit activity
    JavaScript 4 BSD-3-Clause 1 0 13 Updated Sep 19, 2024
  • dis-utilities Public

    Utilities for Data and Information Services

    JaneliaSciComp/dis-utilities’s past year of commit activity
    JavaScript 0 BSD-3-Clause 0 31 0 Updated Sep 19, 2024
  • SongExplorer Public

    deep learning for acoustic signals

    JaneliaSciComp/SongExplorer’s past year of commit activity
    Python 22 BSD-3-Clause 5 5 1 Updated Sep 18, 2024
  • x2s3 Public

    S3 Proxy

    JaneliaSciComp/x2s3’s past year of commit activity
    Python 1 0 0 1 Updated Sep 17, 2024
  • Zebrafish_96well_segmentation_mesure_FPC Public

    Zebrafish 2D auto-segmentation & FPC auto-mesurement

    JaneliaSciComp/Zebrafish_96well_segmentation_mesure_FPC’s past year of commit activity
    Java 0 GPL-3.0 0 0 0 Updated Sep 17, 2024
  • pydantic-ome-ngff Public

    Pydantic models for OME-NGFF

    JaneliaSciComp/pydantic-ome-ngff’s past year of commit activity
    Python 20 BSD-3-Clause 3 6 1 Updated Sep 16, 2024
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