Toolbox for parameter estimation of the Standard Model of diffusion in white matter

CHARM, a model that estimates the GHG impacts and land-use requirements of forestry

This toolbox allows to simulate interactions between neural mass potentials (resonating at 40Hz) in the structural connectome. Here, a single brain region is seen as an oscillator whose dynamics is explained by a Stuart Landau Equation (Hopf Bifurcation including time delay).

Feed-forward neural network that predicts cytokine dynamics of T-cells in response to antigens

Nitrogen balance model components and test procedures

Materials for the PANGEOS Uncertainty Quantification workshop

These are python version of codes that I wrote to analyze images and videos of a macromolecule, that I took via fluorescence microscopy, in my research in grad school.

Large-scale thalamocortical network model for simulating physiological and paroxysmal brain rhythms: version 2

Model of BG components to learn more about mechanisms of DBS

Bottom-up dynamical modeling of biological systems using ordinary, partial, and stochastic differential equations.

Simulation of an FtsZ filament in C++

Data and figures (R-notebooks) for the in-silico biodiversity experiment using DART biophysical model

Jupyter widgets for use with NeuroML

Large-scale thalamocortical network model for simulating physiological and paroxysmal brain rhythms: version 1