Recover genome from megatagenomics data of superworms faeces samples. data_processing.sh: Data QC, read mapping, extracting unmapped reads, read counts from short-gun data cover_genome.sh: de Novo Assembly metagenomics assembly
- FastQC
- Trimmomantic
- BWA-MEM
- SAMTools
- BEDTools
- MEGAHIT
- COVERM