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Welcome to the covtobed wiki!

Introduction

• Introduction
• History
• Installation
  • Testing covtobed
• Implementation: how does covtobed work

Usage

• Using covtobed
  • Detect low-coverage regions
  • Check coverage by strand
  • Calculate the physical coverage
  • Alternative output: "counts"

Technical notes

• Performance
  • Using a wrapper
• Introducing BamToCov
• (legacy) Using "coverage"

External documents:

• A simple tutorial on coverage analysis from the command line