SLEAP v1.3.0a0

Pre-release of SLEAP v1.3.0.

For 1.3.0 we want to give our users some cool new features worth upgrading for! This pre-release includes lots of enhancements and it's fair share of bug fixes.

Warning: This is a pre-release! Expect bugs and strange behavior when testing.

Quick install

conda (Windows/Linux/GPU):

conda create -y -n sleap -c sleap -c sleap/label/dev -c nvidia -c conda-forge sleap=1.3.0a0

pip (any OS except Apple Silicon):

pip install sleap==1.3.0a0

Highlights

• Added scaling functionality for both the instances and bounding box. by @sean-afshar in #1133
• Add Skeleton Templates by @aaprasad in #1122
• Resumable Training by @jimzers in #1130
• Tracking: robust assignment of the best score to an instance by @getzze in #1062
• Set max instances for top down models by @sheridana in #1070
• Flexibly resize input layer of tf.keras.Model upon loading trained model by @roomrys in #1084
• GUI Training: Use hidden params from loaded config by @roomrys in #1053
• Nix export of tracking results by @jgrewe in #1068

Full changelog

Documentation

• Change 'M1' to 'Apple Silicon' by @roomrys in #1188

Enhancements

• GUI Training: Use hidden params from loaded config by @roomrys in #1053
• Add optional unragging arg to model export by @sheridana in #1054
• Tracking: robust assignment of the best score to an instance by @getzze in #1062
• Set max instances for top down models by @sheridana in #1070
• Flexibly resize input layer of tf.keras.Model upon loading trained model by @roomrys in #1084
• Add Option to Make Trail Shade Darker/Lighter by @roomrys in #1103
• Nix export of tracking results by @jgrewe in #1068
• Added scaling functionality for both the instances and bounding box. by @sean-afshar in #1133
• Add better error message for top down by @roomrys in #1121
• Add central padding to SizeMatcher by @jiayinghsu in #1129
• Added MoveNet as an external model reference by @jiayinghsu in #1141
• Resumable Training by @jimzers in #1130
• GenericTableModel/View improvements by @jgrewe in #1163
• Add Skeleton Templates by @aaprasad in #1122
• Add better error message for top down by @roomrys in #1121

Fixes

• Fix config option to split_by_inds by @roomrys in #1060
• Don't create instances during inference if no points were found by @talmo in #1073
• Add one-line fix to VideoWriterSkyvideo by @roomrys in #1082
• Fix parser for sleap-export by @roomrys in #1085
• Refactor commands to load project as AppCommands by @roomrys in #1098
• Create signal that updates plot instead of removing and replotting items by @roomrys in #1134
• Fix symmetric skeletons (via table input) by @roomrys in #1136
• Fix body vs symmetry subgraph filtering by @talmo in #1142
• Handle changing backbones in training editor GUI by @talmo in #1140
• Hotfix for video save #1098 by @roomrys in #1148

New Contributors

• @jgrewe made their first contribution in #1068
• @sean-afshar made their first contribution in #1133