SLEAP v1.3.0

For 1.3.0 we want to give our users some cool new features worth upgrading for! This release includes a many enhancements we hope our users will enjoy as well as its fair share of bug fixes.

Quick install

conda (Windows/Linux/GPU):

conda create -y -n sleap -c sleap -c nvidia -c conda-forge sleap=1.3.0

pip (any OS except Apple Silicon):

pip install sleap==1.3.0

What's Changed

Highlights

• Added scaling functionality for both the instances and bounding box. by @sean-afshar in #1133
• Add Skeleton Templates by @aaprasad in #1122
• Resumable Training by @jimzers in #1130
• Tracking: robust assignment of the best score to an instance by @getzze in #1062
• Set max instances for top down models by @sheridana in #1070
• Flexibly resize input layer of tf.keras.Model upon loading trained model by @roomrys in #1084
• GUI Training: Use hidden params from loaded config by @roomrys in #1053
• Nix export of tracking results by @jgrewe in #1068
• Expose MoveNet to the Inference GUI by @sheridana in #1190
• Add option to "Add Videos..." from single image files by @eberrigan in #1183
• Add GUI and API option to remove unused tracks by @roomrys in #1210
• Add instance and track copy/pasting by @talmo in #1206
• Expose supervised ID models to GUI by @sheridana in #1213
• Ensure data format compatibility by @roomrys in #1222

Full Changelog

Documentation

• Change 'M1' to 'Apple Silicon' by @roomrys in #1188
• Update the Documentation badge by @roomrys in #1211

Enhancements

• GUI Training: Use hidden params from loaded config by @roomrys in #1053
• Add optional unragging arg to model export by @sheridana in #1054
• Tracking: robust assignment of the best score to an instance by @getzze in #1062
• Set max instances for top down models by @sheridana in #1070
• Flexibly resize input layer of tf.keras.Model upon loading trained model by @roomrys in #1084
• Add Option to Make Trail Shade Darker/Lighter by @roomrys in #1103
• Nix export of tracking results by @jgrewe in #1068
• Added scaling functionality for both the instances and bounding box. by @sean-afshar in #1133
• Add better error message for top down by @roomrys in #1121
• Add central padding to SizeMatcher by @jiayinghsu in #1129
• Added MoveNet as an external model reference by @jiayinghsu in #1141
• Resumable Training by @jimzers in #1130
• GenericTableModel/View improvements by @jgrewe in #1163
• Add Skeleton Templates by @aaprasad in #1122
• Add better error message for top down by @roomrys in #1121
• Add option of 2 for marker size by @roomrys in #1205
• Support new DLC multi-animal configs by @roomrys in #1204
• Expose MoveNet to the Inference GUI by @sheridana in #1190
• Add option to "Add Videos..." from single image files by @eberrigan in #1183
• Add GUI and API option to remove unused tracks by @roomrys in #1210
• Add instance and track copy/pasting by @talmo in #1206
• Expose supervised ID models to GUI by @sheridana in #1213
• Toggle grayscale of all videos using "Toggle Grayscale" button by @roomrys in #1215

Fixes

• Fix config option to split_by_inds by @roomrys in #1060
• Don't create instances during inference if no points were found by @talmo in #1073
• Add one-line fix to VideoWriterSkyvideo by @roomrys in #1082
• Fix parser for sleap-export by @roomrys in #1085
• Refactor commands to load project as AppCommands by @roomrys in #1098
• Create signal that updates plot instead of removing and replotting items by @roomrys in #1134
• Fix symmetric skeletons (via table input) by @roomrys in #1136
• Fix body vs symmetry subgraph filtering by @talmo in #1142
• Handle changing backbones in training editor GUI by @talmo in #1140
• Hotfix for video save #1098 by @roomrys in #1148
• Update no-cuda-env to fix pillow errors by @roomrys in #1201
• Fix environment.yml by @talmo in #1202
• Fix typo in Skeleton.__repr__ by @roomrys in #1200
• Split trainer cli function into two functions by @roomrys in #1197
• Threaded inference by @talmo in #1203
• Emit the signals to reset table views when data is empty by @talmo in #1207
• Ensure data format compatibility by @roomrys in #1222

New Contributors

• @jgrewe made their first contribution in #1068
• @sean-afshar made their first contribution in #1133
• @eberrigan made their first contribution in #1183

Full Changelog: v1.2.9...v1.3.0