chore: snakefmt

snakemake-workflows · Aug 26, 2024 · 82a046f · 82a046f
1 parent b14d8cf
commit 82a046f
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Showing 2 changed files with 4 additions and 4 deletions.
diff --git a/workflow/rules/common.smk b/workflow/rules/common.smk
@@ -1309,9 +1309,7 @@ def get_vembrane_config(wildcards, input):
         "FORMAT['OBS']",
     ]
     for p in multi_entry_fields_prefix:
-        sort_order.extend(
-            get_and_sort_multi_entry_fields(p)
-        )
+        sort_order.extend(get_and_sort_multi_entry_fields(p))
     sort_order.extend(
         [
             # only needed for fusions, as a join key; dropped in

diff --git a/workflow/rules/maf.smk b/workflow/rules/maf.smk
@@ -29,7 +29,9 @@ rule group_vcf_to_maf:
             get_info_prob_fields_for_tables(wc, input)
             + get_info_fusion_fields_for_tables(wc)
         ),
-        vcf_primary_alias=lookup(dpath="maf/primary_alias", within=config, default="tumor"),
+        vcf_primary_alias=lookup(
+            dpath="maf/primary_alias", within=config, default="tumor"
+        ),
         vcf_control_alias_option=(
             f'--vcf-normal-id {lookup(dpath= "maf/control_alias", within= config, default= "")}'
             if lookup(dpath="maf/control_alias", within=config, default=False)