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fix: make the aux-files example use the existing ANN field `SYMBO…
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…L` (#320)

* fix: make the `aux-files` example use the existing `ANN` field `SYMBOL`

This has tripped up multiple people by now, so let's fix the example in the standard `config/config.yaml` that everybody gets upon module-based deployment.

* fix: also update .test/config-no-candidate-filtering/config.yaml
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dlaehnemann committed Aug 13, 2024
1 parent 37b569d commit 0dd0c36
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Showing 2 changed files with 2 additions and 2 deletions.
2 changes: 1 addition & 1 deletion .test/config-no-candidate-filtering/config.yaml
Original file line number Diff line number Diff line change
Expand Up @@ -48,7 +48,7 @@ calling:
with_aux:
aux-files:
super_interesting_genes: config-no-candidate-filtering/super_interesting_genes.tsv
expression: "ANN['GENE'] in AUX['super_interesting_genes']"
expression: "ANN['SYMBOL'] in AUX['super_interesting_genes']"
fdr-control:
threshold: 0.05
events:
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2 changes: 1 addition & 1 deletion config/config.yaml
Original file line number Diff line number Diff line change
Expand Up @@ -119,7 +119,7 @@ calling:
gene_list_filter:
aux-files:
super_interesting_genes: "config/super_interesting_genes.tsv"
expression: "ANN['GENE'] in AUX['super_interesting_genes']"
expression: "ANN['SYMBOL'] in AUX['super_interesting_genes']"
fdr-control:
threshold: 0.05
# denote FDR control mode, see https://varlociraptor.github.io/docs/filtering
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