Y24-271 - LCM Triomics Configuration + Integration Suite Tests

[SHIV5T3R]

Closes #4291

Changes proposed in this pull request

• Added configuration for the initial steps of the pipeline

Instructions for Reviewers

[All PRs] - Confirm PR template filled
[Feature Branches] - Review code
[Production Merges to main]
    - Check story numbers included
    - Check for debug code
    - Check version

[codecov]

Codecov Report

All modified and coverable lines are covered by tests ✅

Project coverage is 87.56%. Comparing base (541aa23) to head (59bcfc6).
Report is 52 commits behind head on develop.

Additional details and impacted files

@@             Coverage Diff             @@
##           develop    #4305      +/-   ##
===========================================
- Coverage    87.60%   87.56%   -0.04%     
===========================================
  Files         1383     1383              
  Lines        29875    29875              
===========================================
- Hits         26172    26161      -11     
- Misses        3703     3714      +11     

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[KatyTaylor]

Left some suggestions - up for debate. And maybe we commit this version first and then do the changes later in Y24-266.

[andrewsparkes]

Looks good, just suggested changes to the comments in the submission template file.
I assume we'll add a 2nd submission template for the WGS route in another story.

[yoldas]

Looks good. I have suggested a few changes. The request type name is particularly important as it is visible to the user.

[yoldas]

Also merge develop back into your branch to get the updates to make all tests pass.

[yoldas]

Thanks for the changes as well.