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[shotgun] Automated Trial (Prepare) #205

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merged 2 commits into from
Apr 14, 2024
Merged

[shotgun] Automated Trial (Prepare) #205

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34b5987
Automated updates to seed environment: shotgun
q2d2 Apr 14, 2024
18e4a90
Update conda environments (Prepare-2024.5/shotgun/2024-04-14)
q2d2 Apr 14, 2024
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54 changes: 30 additions & 24 deletions 2024.5/shotgun/passed/qiime2-shotgun-macos-latest-conda.yml
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Original file line number Diff line number Diff line change
Expand Up @@ -121,9 +121,8 @@ dependencies:
- contourpy=1.1.1
- cryptography=42.0.5
- curl=7.88.1
- cutadapt=4.7
- cutadapt=4.8
- cycler=0.12.1
- cython=3.0.10
- debugpy=1.8.1
- decorator=4.4.2
- defusedxml=0.7.1
Expand All @@ -150,18 +149,19 @@ dependencies:
- fontconfig=2.14.2
- fonts-conda-ecosystem=1
- fonts-conda-forge=1
- fonttools=4.50.0
- fonttools=4.51.0
- formulaic=1.0.1
- fqdn=1.5.1
- freetype=2.12.1
- fribidi=1.0.10
- future=1.0.0
- gawk=5.3.0
- gettext=0.21.1
- gettext=0.22.5
- gettext-tools=0.22.5
- gffutils=0.10.1
- gfortran_impl_osx-64=11.4.0
- gfortran_osx-64=11.4.0
- giflib=5.2.1
- giflib=5.2.2
- glimmerhmm=3.0.4
- globus-sdk=3.39.0
- glpk=5.0
Expand Down Expand Up @@ -194,7 +194,7 @@ dependencies:
- isoduration=20.11.0
- jedi=0.19.1
- jinja2=3.1.3
- joblib=1.3.2
- joblib=1.4.0
- jpeg=9e
- jq=1.7.1
- jsonlines=3.0.0
Expand All @@ -205,7 +205,7 @@ dependencies:
- jupyter_client=7.4.9
- jupyter_core=5.7.2
- jupyter_events=0.10.0
- jupyter_server=2.13.0
- jupyter_server=2.14.0
- jupyter_server_terminals=0.5.3
- jupyterlab_pygments=0.3.0
- jupyterlab_widgets=3.0.10
Expand All @@ -218,6 +218,8 @@ dependencies:
- ld64_osx-64=711
- lerc=4.0.0
- libaec=1.1.3
- libasprintf=0.22.5
- libasprintf-devel=0.22.5
- libblas=3.9.0
- libbrotlicommon=1.1.0
- libbrotlidec=1.1.0
Expand All @@ -232,12 +234,16 @@ dependencies:
- libexpat=2.6.2
- libffi=3.4.4
- libgd=2.3.3
- libgettextpo=0.22.5
- libgettextpo-devel=0.22.5
- libgfortran=5.0.0
- libgfortran-devel_osx-64=11.4.0
- libgfortran5=13.2.0
- libglib=2.78.1
- libiconv=1.17
- libidn2=2.3.7
- libintl=0.22.5
- libintl-devel=0.22.5
- liblapack=3.9.0
- liblapacke=3.9.0
- libllvm14=14.0.6
Expand All @@ -257,7 +263,7 @@ dependencies:
- libxml2=2.10.3
- libxslt=1.1.37
- libzlib=1.2.13
- llvm-openmp=18.1.2
- llvm-openmp=18.1.3
- llvm-tools=17.0.6
- llvmlite=0.41.1
- lockfile=0.12.2
Expand Down Expand Up @@ -289,9 +295,9 @@ dependencies:
- nbconvert=7.16.3
- nbconvert-core=7.16.3
- nbconvert-pandoc=7.16.3
- nbformat=5.10.3
- nbformat=5.10.4
- ncbi-datasets-pylib=16.6.0
- ncbi-vdb=3.0.0
- ncbi-vdb=3.1.0
- ncurses=6.4.20240210
- nest-asyncio=1.6.0
- networkx=3.1
Expand All @@ -307,12 +313,12 @@ dependencies:
- overrides=7.7.0
- packaging=24.0
- pandas=1.5.3
- pandoc=3.1.12.3
- pandoc=3.1.13
- pandocfilters=1.5.0
- pango=1.50.14
- paramiko=3.4.0
- parsl=2023.12.4
- parso=0.8.3
- parso=0.8.4
- pathlib=1.0.1
- patsy=0.5.3
- pbzip2=1.1.13
Expand All @@ -332,7 +338,7 @@ dependencies:
- perl-constant=1.33
- perl-dbi=1.643
- perl-digest-perl-md5=1.9
- perl-encode=3.19
- perl-encode=3.21
- perl-exporter=5.74
- perl-exporter-tiny=1.002002
- perl-extutils-config=0.008
Expand Down Expand Up @@ -419,7 +425,7 @@ dependencies:
- python-fastjsonschema=2.19.1
- python-isal=1.6.1
- python-json-logger=2.0.7
- python-zlib-ng=0.4.1
- python-zlib-ng=0.4.2
- python_abi=3.8
- pytz=2024.1
- pyvcf3=1.0.3
Expand All @@ -445,7 +451,7 @@ dependencies:
- q2-sample-classifier=2024.5.0.dev0
- q2-sapienns=2024.5.0.dev0
- q2-taxa=2024.5.0.dev0
- q2-types=2024.5.0.dev0+4.g823b5a4
- q2-types=2024.5.0.dev0+5.gd24a69d
- q2-vsearch=2024.5.0.dev0
- q2cli=2024.5.0.dev0
- q2templates=2024.5.0.dev0
Expand Down Expand Up @@ -501,7 +507,7 @@ dependencies:
- r-e1071=1.7_14
- r-ecosolver=0.5.5
- r-ellipsis=0.3.2
- r-emmeans=1.10.0
- r-emmeans=1.10.1
- r-energy=1.7_11
- r-estimability=1.4.1
- r-evaluate=0.23
Expand Down Expand Up @@ -543,7 +549,7 @@ dependencies:
- r-hmisc=5.1_2
- r-hms=1.1.3
- r-htmltable=2.4.2
- r-htmltools=0.5.8
- r-htmltools=0.5.8.1
- r-htmlwidgets=1.6.4
- r-httr=1.4.7
- r-ids=1.0.1
Expand All @@ -555,7 +561,7 @@ dependencies:
- r-jpeg=0.1_10
- r-jquerylib=0.1.4
- r-jsonlite=1.8.8
- r-knitr=1.45
- r-knitr=1.46
- r-labeling=0.4.3
- r-lambda.r=1.2.4
- r-lattice=0.22_6
Expand All @@ -569,7 +575,7 @@ dependencies:
- r-magrittr=2.0.3
- r-mass=7.3_60.0.1
- r-matrix=1.6_5
- r-matrixstats=1.2.0
- r-matrixstats=1.3.0
- r-memoise=2.0.1
- r-mgcv=1.9_1
- r-mime=0.12
Expand Down Expand Up @@ -679,7 +685,7 @@ dependencies:
- readline=8.2
- referencing=0.34.0
- requests=2.31.0
- rescript=2024.5.0.dev0+2.ga0df425
- rescript=2024.5.0.dev0+3.g6e87cfe
- rfc3339-validator=0.1.4
- rfc3986-validator=0.1.1
- rpds-py=0.18.0
Expand All @@ -689,7 +695,7 @@ dependencies:
- scipy=1.10.0
- seaborn=0.12.2
- seaborn-base=0.12.2
- send2trash=1.8.2
- send2trash=1.8.3
- sepp=4.3.10
- setproctitle=1.3.3
- setuptools=69.2.0
Expand Down Expand Up @@ -722,8 +728,8 @@ dependencies:
- traitlets=5.9.0
- typeguard=2.13.3
- types-python-dateutil=2.9.0.20240316
- typing-extensions=4.10.0
- typing_extensions=4.10.0
- typing-extensions=4.11.0
- typing_extensions=4.11.0
- typing_utils=0.1.0
- tzlocal=2.1
- ucsc-fatotwobit=366
Expand All @@ -734,7 +740,7 @@ dependencies:
- unifrac-binaries=1.3.2
- uri-template=1.3.0
- urllib3=1.26.18
- vsearch=2.27.0
- vsearch=2.27.1
- wcwidth=0.2.13
- webcolors=1.13
- webencodings=0.5.1
Expand Down
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