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main function update #49

Merged
merged 25 commits into from
Feb 16, 2024
Merged

main function update #49

merged 25 commits into from
Feb 16, 2024

Commits on Feb 15, 2024

  1. removed prints in sorting criteria definition to avoid overwriting in… 

    … verbose file
    @samuelecancellieri
    samuelecancellieri committed Feb 15, 2024
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  2. set branch to test funcion as main crisprme function

    @samuelecancellieri
    samuelecancellieri committed Feb 15, 2024
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  3. test function implementation

    @samuelecancellieri
    samuelecancellieri committed Feb 15, 2024
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  4. set test function in help

    @samuelecancellieri
    samuelecancellieri committed Feb 15, 2024
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  5. correct call to test

    @samuelecancellieri
    samuelecancellieri committed Feb 15, 2024
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  6. corrected name to test pam

    @samuelecancellieri
    samuelecancellieri committed Feb 15, 2024
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  7. Revert "corrected name to test pam" 

    This reverts commit 1870f5f.
    @samuelecancellieri
    samuelecancellieri committed Feb 15, 2024
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  8. set spcas9 pam as test one

    @samuelecancellieri
    samuelecancellieri committed Feb 15, 2024
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  9. fix test call

    @samuelecancellieri
    samuelecancellieri committed Feb 15, 2024
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  10. upload necessary annotation files

    @samuelecancellieri
    samuelecancellieri committed Feb 15, 2024
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  11. update test function to use annotation

    @samuelecancellieri
    samuelecancellieri committed Feb 15, 2024
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  12. typo in download function corrected

    @samuelecancellieri
    samuelecancellieri committed Feb 15, 2024
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  13. set download annotations

    @samuelecancellieri
    samuelecancellieri committed Feb 15, 2024
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  14. update wget in test to show what is going on

    @samuelecancellieri
    samuelecancellieri committed Feb 15, 2024
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  15. update download annotation function

    @samuelecancellieri
    samuelecancellieri committed Feb 15, 2024
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Commits on Feb 16, 2024

  1. change wget with curl

    @samuelecancellieri
    samuelecancellieri committed Feb 16, 2024
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  2. remove check on complete in curl command

    @samuelecancellieri
    samuelecancellieri committed Feb 16, 2024
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  3. overwrite file to avoid problem with broken download

    @samuelecancellieri
    samuelecancellieri committed Feb 16, 2024
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  4. use verbose curl to check download

    @samuelecancellieri
    samuelecancellieri committed Feb 16, 2024
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  5. test with wget on server

    @samuelecancellieri
    samuelecancellieri committed Feb 16, 2024
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  6. insert script to clean the directory from all download and user gener… 

    …ated data
    @samuelecancellieri
    samuelecancellieri committed Feb 16, 2024
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  7. remove also genome_library

    @samuelecancellieri
    samuelecancellieri committed Feb 16, 2024
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  8. remove tar file for annotations after download and untar

    @samuelecancellieri
    samuelecancellieri committed Feb 16, 2024
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  9. perm update to reset_dirs

    Samuele Cancellieri committed Feb 16, 2024
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  10. update test settings to generate more results

    @samuelecancellieri
    samuelecancellieri committed Feb 16, 2024
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