Repositories list

• navis

  Public
  Python 3 library for Neuron Analysis and Visualization

  Python

  •

  GNU General Public License v3.0

  •32•0•0•0•Updated Jul 31, 2024Jul 31, 2024

• transform_service

  Public
  Small web service to transform fly data

  Python

  •2•2•2•0•Updated Nov 25, 2023Nov 25, 2023

• fafbseg-py

  Public
  Tools to work with manual and auto-segmented data in FAFB

  Python

  •

  GNU General Public License v3.0

  •5•0•0•0•Updated Nov 3, 2023Nov 3, 2023

• pymaid

  Public
  Collection of Python 3 tools to work with neuron data from CATMAID servers

  Python

  •

  GNU General Public License v3.0

  •11•0•0•0•Updated Oct 27, 2023Oct 27, 2023

• fafbseg

  Public
  Support functions for analysis of FAFB EM segmentation

  R

  •

  GNU General Public License v3.0

  •4•0•0•0•Updated May 24, 2022May 24, 2022

• pn_kc

  Public
  Code for the PN-KC paper (Zheng et al. 2020, https://doi.org/10.1101/2020.04.17.047167)

  Jupyter Notebook

  •1•1•0•0•Updated Feb 4, 2022Feb 4, 2022

• temca2-catmaid

  Public
  Repository for catmaid in a box for the temca2 data products

  Python

  •1•2•0•0•Updated Oct 6, 2020Oct 6, 2020

• obj_to_ngl

  Public
  Small utility to convert meshes to a fake Neuroglancer mesh layer

  Python

  •0•2•0•0•Updated Oct 1, 2020Oct 1, 2020

• skeleton_server

  Public
  Hack to view CATMAID skeletons in Neuroglancer

  Python

  •0•0•0•0•Updated Aug 9, 2020Aug 9, 2020

• CloudVolumeServer

  Public
  Flask application to serve data via CloudVolume

  Python

  •

  BSD 2-Clause "Simplified" License

  •3•0•0•0•Updated May 21, 2020May 21, 2020

• temca2data

  Public
  Public code for Zheng, Lauritzen et al. (2018)

  R

  •

  MIT License

  •2•15•0•0•Updated Mar 22, 2019Mar 22, 2019

• catmaid-tools

  Public
  Ultilities for CATMAID, mostly ImgLib2 based

  Java

  •4•0•0•0•Updated Dec 5, 2014Dec 5, 2014