Repositories list

• aeon_mecha

  Public
  Project Aeon's main library for interfacing with acquired data. Contains modules for raw data file io, data querying, data processing, data qc, database ingestion, and building computational data pipelines.

  python

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •5•4•58•5•Updated Sep 29, 2024Sep 29, 2024

• aeon_analysis

  Public
  Data Analysis code for Project Aeon

  BSD 3-Clause "New" or "Revised" License

  •0•0•2•0•Updated Sep 27, 2024Sep 27, 2024

• aeon_docs

  Public
  Online docs repo for Project Aeon.

  Jupyter Notebook

  •

  BSD 3-Clause "New" or "Revised" License

  •1•1•9•1•Updated Sep 26, 2024Sep 26, 2024

• NeuralPlayground

  Public
  The standardised environment for the hippocampus and entorhinal cortex models

  Python

  •

  MIT License

  •6•63•8•3•Updated Sep 24, 2024Sep 24, 2024

• microharp

  Public
  A Harp protocol and device application framework micropython package.

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •1•4•0•1•Updated Sep 24, 2024Sep 24, 2024

• crabs-exploration

  Public
  A toolkit for detecting and tracking crabs in the field.

  computer-visionobject-detectionneuroinformatics+ 4computer-vision-toolsanimal-behaviourcrabsvideo-processing-pipeline

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •0•7•51•11•Updated Sep 16, 2024Sep 16, 2024

• FNT_timestamp_alignment

  Public
  Pipeline for aligning harp and ephys timestamps to a single master clock.

  Jupyter Notebook

  •0•2•3•0•Updated Sep 12, 2024Sep 12, 2024

• FNT_behavior_analysis

  Public
  Pipeline for giving an overview of behavioural data from mice in the flexible navigation task.

  MATLAB

  •0•1•0•0•Updated Sep 10, 2024Sep 10, 2024

• aeon_experiments

  Public
  Experiment workflows for Project Aeon

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •0•2•90•1•Updated Sep 6, 2024Sep 6, 2024

• aeon_feeder_fix

  Public
  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •0•0•0•1•Updated Aug 20, 2024Aug 20, 2024

• glmhmm

  Public
  code to fit GLMs, HMMs, and GLM-HMMs (aka IO-HMMs). Fork for FlexiVexi

  Jupyter Notebook

  •15•1•0•0•Updated Aug 14, 2024Aug 14, 2024

• rc2_analysis

  Public
  MATLAB

  •0•1•0•0•Updated Aug 8, 2024Aug 8, 2024

• swc-computing

  Public
  Community driven guides to solving computational problems at SWC/GCNU

  Creative Commons Zero v1.0 Universal

  •0•2•0•0•Updated Jul 29, 2024Jul 29, 2024

• aeon_acquisition

  Public
  Task control and acquisition systems for Project Aeon.

  C#

  •

  BSD 3-Clause "New" or "Revised" License

  •3•3•7•3•Updated Jul 18, 2024Jul 18, 2024

• aeon_lineardrive

  Public
  A linear stage controller for moving the position of a commutator

  C#

  •1•0•0•0•Updated Apr 3, 2024Apr 3, 2024

• aeon_feeder

  Public
  C

  •

  Other

  •1•0•0•0•Updated Mar 13, 2024Mar 13, 2024

• OpenSerialSection

  Public
  Open Serial Section Imaging @ SWC

  SCSS

  •

  MIT License

  •25k•0•0•0•Updated Mar 5, 2024Mar 5, 2024

• WAZP

  Public
  Wasp Animal-tracking Zoo project with Pose estimation

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •1•5•36•8•Updated Feb 2, 2024Feb 2, 2024

• pmt_controller

  Public
  Python

  •1•0•0•0•Updated Nov 22, 2023Nov 22, 2023

• aeon_blog

  Public
  Project Aeon's "meta" repo that details the project, with a focus on dev practices and notes on technology review, challenges and insights.

  Shell

  •0•2•2•0•Updated Nov 2, 2023Nov 2, 2023

• rc2_matlab

  Public
  MATLAB

  •0•2•0•0•Updated Jul 21, 2023Jul 21, 2023

• software-skills

  Public archive
  Software skills training at the Sainsbury Wellcome Centre & Gatsby Computational Neuroscience Unit

  HTML

  •

  Creative Commons Attribution 4.0 International

  •3•2•0•0•Updated Mar 9, 2023Mar 9, 2023

• Pyper

  Public
  Motion Tracking

  pythonbehavioropencv+ 2motion-detectionneuroscience

  Python

  •10•13•7•1•Updated Jan 12, 2023Jan 12, 2023

• lasagna

  Public
  3-D imaging visualisation through slicing

  neuroscienceregistrationanatomy+ 2pythonpyqtgraph

  Python

  •

  GNU General Public License v3.0

  •7•27•103•0•Updated Dec 23, 2022Dec 23, 2022

• socket-feeder

  Public
  Wireless feeder controller

  Python

  •1•0•0•0•Updated Dec 12, 2022Dec 12, 2022

• micropython

  Public
  MicroPython - a lean and efficient Python implementation for microcontrollers and constrained systems

  C

  •

  Other

  •7.7k•1•0•0•Updated Oct 18, 2022Oct 18, 2022

• looming_spots

  Public
  Python

  •0•1•0•0•Updated Aug 9, 2022Aug 9, 2022

• element-array-ephys

  Public
  DataJoint Element for Extracellular Array Electrophysiology - NIH U24

  Python

  •

  MIT License

  •33•0•0•0•Updated Jun 17, 2022Jun 17, 2022

• AnimalTrackingPipelines

  Public
  Jupyter Notebook

  •3•2•0•1•Updated Apr 26, 2022Apr 26, 2022

• lenzietal2022_lse_figures

  Public
  Python

  •0•0•0•0•Updated Apr 25, 2022Apr 25, 2022