update readme with install instruction

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openalea · Mar 9, 2023 · 17dd81d · 17dd81d
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diff --git a/README.md b/README.md
@@ -1,6 +1,5 @@
 ## PhenoTrack3D: an automatic high-throughput phenotyping pipeline to track maize organs over time
 
-This work is based on our biorxiv report (TODO), by Benoit Daviet, Romain Fernandez, Llorenc Cabrera-Bosquet, Christophe Pradal and Christian Fournier.
 PhenoTrack3D can be used to track leaf organs over time, in a time-series of 3D maize plant reconstructions. 
 Such 3D reconstructions can be obtained from sets of RGB images with the Phenomenal pipeline (https://github.com/openalea/phenomenal)
 
@@ -15,6 +14,19 @@ Such 3D reconstructions can be obtained from sets of RGB images with the Phenome
 Our code is released under **Cecill-C** (https://cecill.info/licences/Licence_CeCILL_V1.1-US.txt) licence. 
 See LICENSE file for details.
 
+### Install
+
+install dependencies with conda:
+
+	conda create -n phenotrack -c conda-forge -c openalea3 openalea.phenomenal skan=0.9
+	conda activate phenotrack
+
+Clone repo and run setup
+
+    git clone https://github.com/openalea/phenotrack3d.git
+    cd phenotrack3d
+
+
 ### References
 
 If you use PhenoTrack3D to your research, cite:

diff --git a/setup.py b/setup.py
@@ -29,7 +29,7 @@
 
 setup(
     name="openalea.maizetrack",
-    version="0.0.1",
+    version="0.1.3",
     description="",
     long_description="",