Skip to content
@neuroinformatics-unit

SWC/GCNU Neuroinformatics Unit

Neuroscience & ML Research Software Engineering Group
README.md

Neuroinformatics Unit

The Neuroinformatics Unit (NIU) is a Research Software Engineering team based at the Sainsbury Wellcome Centre and the Gatsby Computational Neuroscience Unit.

The NIU is dedicated to the development of high quality, accurate, robust, easy to use and maintainable open-source software for neuroscience and machine learning. We collaborate with researchers and other software engineers to advance research in the two research centres and make new algorithms and tools available to the global community.

We also lead development of the BrainGlobe Initiative and contribute to various Sainsbury Wellcome Centre and other open-source tools.

Pinned Loading

  1. movement movement Public

    Python tools for analysing body movements across space and time

    Python 96 8

  2. NeuroBlueprint NeuroBlueprint Public

    Lightweight data specification for systems neuroscience, inspired by BIDS.

    17 1

  3. datashuttle datashuttle Public

    Tool for the creation, validation and transfer of neuroscience project folders.

    Python 14 3

  4. python-cookiecutter python-cookiecutter Public

    Utility to create a basic Python project structure with tests, CI etc.

    Python 22 3

  5. fancylog fancylog Public

    Fancier logging with python.

    Python 12 4

  6. spikewrap spikewrap Public

    A tool to streamline extracellular electrophysiology analysis using SpikeInterface

    Python 13

Repositories

Showing 10 of 53 repositories
  • course-behavioural-analysis Public

    Materials and slides for the video-based analysis of animal behaviour course.

    neuroinformatics-unit/course-behavioural-analysis’s past year of commit activity
    Jupyter Notebook 4 BSD-3-Clause 1 3 3 Updated Sep 30, 2024
  • course-behaviour-hpc Public
    neuroinformatics-unit/course-behaviour-hpc’s past year of commit activity
    Python 5 BSD-3-Clause 0 1 1 Updated Sep 30, 2024
  • spikewrap Public

    A tool to streamline extracellular electrophysiology analysis using SpikeInterface

    neuroinformatics-unit/spikewrap’s past year of commit activity
    Python 13 BSD-3-Clause 0 24 3 Updated Sep 30, 2024
  • rsp-vision Public

    Analysis and visualization of calcium imaging data from retrosplenial cortex

    neuroinformatics-unit/rsp-vision’s past year of commit activity
    Python 8 BSD-3-Clause 0 23 1 Updated Sep 30, 2024
  • derotation Public

    Derotate images acquired via 2-photon or 3-photon calcium imaging

    neuroinformatics-unit/derotation’s past year of commit activity
    Python 7 BSD-3-Clause 0 11 5 Updated Sep 30, 2024
  • movement Public

    Python tools for analysing body movements across space and time

    neuroinformatics-unit/movement’s past year of commit activity
    Python 96 BSD-3-Clause 8 74 14 Updated Sep 30, 2024
  • slides-SWC-PhD-intro Public Forked from neuroinformatics-unit/slides-neuroinformatics-unit-OCNS-INCF

    Slides introducing the software skills courses on the SWC/GCNU PhD course

    neuroinformatics-unit/slides-SWC-PhD-intro’s past year of commit activity
    SCSS 0 BSD-3-Clause 2 1 0 Updated Sep 30, 2024
  • datashuttle Public

    Tool for the creation, validation and transfer of neuroscience project folders.

    neuroinformatics-unit/datashuttle’s past year of commit activity
    Python 14 BSD-3-Clause 3 37 2 Updated Sep 30, 2024
  • software-skills Public

    Software skills training at the Sainsbury Wellcome Centre & Gatsby Computational Neuroscience Unit

    neuroinformatics-unit/software-skills’s past year of commit activity
    7 CC-BY-4.0 0 0 0 Updated Sep 27, 2024
  • swc-slack Public

    Tools to interface with slack

    neuroinformatics-unit/swc-slack’s past year of commit activity
    Python 7 BSD-3-Clause 1 0 0 Updated Sep 26, 2024
View all repositories

Top languages

Loading…

Most used topics

Loading…