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Updating Genome Nexus Subworkflow + Modules (for nucleovar nf-core lint check) #141

Merged
merged 16 commits into from
Sep 9, 2024
Merged

Updating Genome Nexus Subworkflow + Modules (for nucleovar nf-core lint check) #141

merged 16 commits into from
Sep 9, 2024

Commits on Aug 28, 2024

  1. Merge pull request #134 from mskcc-omics-workflows/develop 

    hotfix for documentation
    @buehlere
    buehlere committed Aug 28, 2024
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Commits on Sep 6, 2024

  1. test push

    @rnaidu
    rnaidu committed Sep 6, 2024
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  2. updating subworkflow and modules for genome nexus with working versio… 

    …n in nucleovar
    @rnaidu
    rnaidu committed Sep 6, 2024
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  3. updated tests for genome nexus subworkflow and modules

    @rnaidu
    rnaidu committed Sep 6, 2024
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  4. updated subworkflow and modules for genome nexus

    @rnaidu
    rnaidu committed Sep 6, 2024
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  5. Merge branch 'develop' into genome_nexus_lint_update 

    merging develop into current feature branch so everything is up to date
    @rnaidu
    rnaidu committed Sep 6, 2024
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  6. test update

    @rnaidu
    rnaidu committed Sep 6, 2024
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  7. removed redundancy from environment.yml files

    @rnaidu
    rnaidu committed Sep 6, 2024
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  8. committing environment.yml files as is to demonstrate name field error

    @rnaidu
    rnaidu committed Sep 6, 2024
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Commits on Sep 9, 2024

  1. updated environment.yml files for genome nexus modules since environm… 

    …ent_schema.json was updated in develop branch in order to pass nf-core lint checks
    @rnaidu
    rnaidu committed Sep 9, 2024
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  2. Merge branch 'develop' into genome_nexus_lint_update

    @rnaidu
    rnaidu committed Sep 9, 2024
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  3. added versioning in versions.yml output

    @rnaidu
    rnaidu committed Sep 9, 2024
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  4. Merge branch 'genome_nexus_lint_update' of https://github.com/mskcc-o… 

    …mics-workflows/modules into genome_nexus_lint_update

pulling recent updates
    @rnaidu
    rnaidu committed Sep 9, 2024
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  5. added versioning to versions.yml output

    @rnaidu
    rnaidu committed Sep 9, 2024
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  6. updated snapshot for genomenexus/annotationpipeline

    @rnaidu
    rnaidu committed Sep 9, 2024
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  7. removed text file

    @rnaidu
    rnaidu committed Sep 9, 2024
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