updating traceback subworkflow with local changes made to pass nf-cor… #680
Triggered via pull request
September 10, 2024 16:54
rnaidu
Status
Failure
Total duration
3m 59s
Artifacts
–
test.yml
on: pull_request
Matrix: nf-test
Matrix: nf-core-lint
Matrix: pytest
Matrix: verify-markdown-file
confirm-pass
0s
Annotations
5 errors and 13 warnings
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nf-test (subworkflows/traceback, docker)
Process completed with exit code 1.
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nf-test (genotypevariants/all, docker)
Process completed with exit code 1.
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nf-test (subworkflows/traceback, singularity)
Process completed with exit code 1.
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nf-test (genotypevariants/all, singularity)
Process completed with exit code 1.
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confirm-pass
Process completed with exit code 1.
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nf-test-changes
The following actions use a deprecated Node.js version and will be forced to run on node20: mirpedrol/paths-filter@main. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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pytest-changes
The following actions use a deprecated Node.js version and will be forced to run on node20: mirpedrol/paths-filter@main. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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pre-commit
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/checkout@v3, actions/setup-python@v3, actions/cache@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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verify-markdown-file (genotypevariants/all)
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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verify-markdown-file (subworkflows/traceback)
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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verify-markdown-file (subworkflows/traceback)
👉 Get File Contents: Not Found - https://docs.github.com/rest/repos/contents#get-repository-content
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verify-markdown-file (subworkflows/traceback)
👉 undefined
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nf-core-lint (subworkflows/traceback)
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4, actions/cache@v3, actions/setup-java@v3, nf-core/setup-nextflow@v1. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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nf-core-lint (genotypevariants/all)
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4, actions/cache@v3, actions/setup-java@v3, nf-core/setup-nextflow@v1. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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nf-test (subworkflows/traceback, docker)
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-java@v3, nf-core/setup-nextflow@v1, actions/cache@v3, conda-incubator/setup-miniconda@v2. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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nf-test (genotypevariants/all, docker)
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-java@v3, nf-core/setup-nextflow@v1, actions/cache@v3, conda-incubator/setup-miniconda@v2. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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nf-test (subworkflows/traceback, singularity)
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-java@v3, nf-core/setup-nextflow@v1, actions/cache@v3, conda-incubator/setup-miniconda@v2. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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nf-test (genotypevariants/all, singularity)
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-java@v3, nf-core/setup-nextflow@v1, actions/cache@v3, conda-incubator/setup-miniconda@v2. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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