Updating Genome Nexus Subworkflow + Modules (for nucleovar nf-core lint check) #671
rnaidutest.yml
on: pull_request
Matrix: nf-test
Matrix: nf-core-lint
Matrix: pytest
Matrix: verify-markdown-file
confirm-pass
0s
Annotations
3 errors and 17 warnings
|
nf-test (genomenexus/annotationpipeline, docker)
Process completed with exit code 1.
|
|
nf-test (genomenexus/annotationpipeline, singularity)
Process completed with exit code 1.
|
|
confirm-pass
Process completed with exit code 1.
|
|
nf-test-changes
The following actions use a deprecated Node.js version and will be forced to run on node20: mirpedrol/paths-filter@main. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
|
|
pytest-changes
The following actions use a deprecated Node.js version and will be forced to run on node20: mirpedrol/paths-filter@main. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
|
|
pre-commit
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/checkout@v3, actions/setup-python@v3, actions/cache@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
|
|
verify-markdown-file (genomenexus/vcf2maf)
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
|
|
verify-markdown-file (genomenexus/annotationpipeline)
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
|
|
verify-markdown-file (subworkflows/genome_nexus)
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
|
|
verify-markdown-file (subworkflows/genome_nexus)
👉 Get File Contents: Not Found - https://docs.github.com/rest/repos/contents#get-repository-content
|
|
verify-markdown-file (subworkflows/genome_nexus)
👉 undefined
|
|
nf-core-lint (subworkflows/genome_nexus)
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4, actions/cache@v3, actions/setup-java@v3, nf-core/setup-nextflow@v1. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
|
|
nf-core-lint (genomenexus/vcf2maf)
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4, actions/cache@v3, actions/setup-java@v3, nf-core/setup-nextflow@v1. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
|
|
nf-core-lint (genomenexus/annotationpipeline)
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4, actions/cache@v3, actions/setup-java@v3, nf-core/setup-nextflow@v1. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
|
|
nf-test (subworkflows/genome_nexus, docker)
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-java@v3, nf-core/setup-nextflow@v1, actions/cache@v3, conda-incubator/setup-miniconda@v2. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
|
|
nf-test (genomenexus/vcf2maf, docker)
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-java@v3, nf-core/setup-nextflow@v1, actions/cache@v3, conda-incubator/setup-miniconda@v2. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
|
|
nf-test (genomenexus/annotationpipeline, docker)
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-java@v3, nf-core/setup-nextflow@v1, actions/cache@v3, conda-incubator/setup-miniconda@v2. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
|
|
nf-test (genomenexus/vcf2maf, singularity)
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-java@v3, nf-core/setup-nextflow@v1, actions/cache@v3, conda-incubator/setup-miniconda@v2. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
|
|
nf-test (genomenexus/annotationpipeline, singularity)
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-java@v3, nf-core/setup-nextflow@v1, actions/cache@v3, conda-incubator/setup-miniconda@v2. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
|
|
nf-test (subworkflows/genome_nexus, singularity)
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-java@v3, nf-core/setup-nextflow@v1, actions/cache@v3, conda-incubator/setup-miniconda@v2. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
|