Remove 'name' field as mandatory from environment_schema.json #666
Triggered via pull request
September 9, 2024 19:20
rnaidu
Status
Cancelled
Total duration
2m 22s
Artifacts
–
test.yml
on: pull_request
Matrix: nf-test
Matrix: nf-core-lint
Matrix: pytest
Matrix: verify-markdown-file
confirm-pass
0s
Annotations
23 errors and 16 warnings
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nf-test (neoantigenutils/formatnetmhcpan, docker)
The process '/usr/share/miniconda3/condabin/conda' failed with exit code 1
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nf-core-lint (neosv)
Process completed with exit code 1.
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nf-core-lint (neoantigenutils/formatnetmhcpan)
Process completed with exit code 1.
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nf-core-lint (netmhcstabpan)
Process completed with exit code 1.
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nf-core-lint (netmhcpan)
Process completed with exit code 1.
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nf-core-lint (neoantigenutils/neoantigeninput)
Process completed with exit code 1.
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nf-test (neoantigenutils/neoantigeninput, singularity)
Canceling since a higher priority waiting request for 'Run tests-143' exists
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nf-test (neoantigenutils/neoantigeninput, singularity)
The operation was canceled.
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nf-test (netmhcstabpan, docker)
Canceling since a higher priority waiting request for 'Run tests-143' exists
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nf-test (netmhcstabpan, docker)
The operation was canceled.
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nf-test (netmhcpan, docker)
Canceling since a higher priority waiting request for 'Run tests-143' exists
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nf-test (netmhcpan, docker)
The operation was canceled.
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nf-test (neosv, docker)
Canceling since a higher priority waiting request for 'Run tests-143' exists
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nf-test (neosv, docker)
The operation was canceled.
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nf-test (netmhcpan, singularity)
Canceling since a higher priority waiting request for 'Run tests-143' exists
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nf-test (netmhcpan, singularity)
The operation was canceled.
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nf-test (netmhcstabpan, singularity)
Canceling since a higher priority waiting request for 'Run tests-143' exists
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nf-test (netmhcstabpan, singularity)
The operation was canceled.
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nf-test (neosv, singularity)
Canceling since a higher priority waiting request for 'Run tests-143' exists
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nf-test (neosv, singularity)
The operation was canceled.
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nf-test (neoantigenutils/formatnetmhcpan, singularity)
Canceling since a higher priority waiting request for 'Run tests-143' exists
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nf-test (neoantigenutils/formatnetmhcpan, singularity)
The operation was canceled.
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confirm-pass
Process completed with exit code 1.
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nf-test-changes
The following actions use a deprecated Node.js version and will be forced to run on node20: mirpedrol/paths-filter@main. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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pytest-changes
The following actions use a deprecated Node.js version and will be forced to run on node20: mirpedrol/paths-filter@main. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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pre-commit
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/checkout@v3, actions/setup-python@v3, actions/cache@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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verify-markdown-file (neoantigenutils/neoantigeninput)
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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verify-markdown-file (neoantigenutils/formatnetmhcpan)
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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verify-markdown-file (neosv)
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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verify-markdown-file (netmhcpan)
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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verify-markdown-file (netmhcstabpan)
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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nf-test (neoantigenutils/formatnetmhcpan, docker)
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-java@v3, nf-core/setup-nextflow@v1, actions/cache@v3, conda-incubator/setup-miniconda@v2. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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nf-test (neoantigenutils/formatnetmhcpan, docker)
UnavailableInvalidChannel: HTTP 403 FORBIDDEN for channel conda-forge <https://conda.anaconda.org/conda-forge>
The channel is not accessible or is invalid.
You will need to adjust your conda configuration to proceed.
Use `conda config --show channels` to view your configuration's current state,
and use `conda config --show-sources` to view config file locations.
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nf-core-lint (neosv)
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4, actions/cache@v3, actions/setup-java@v3, nf-core/setup-nextflow@v1. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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nf-core-lint (neoantigenutils/formatnetmhcpan)
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4, actions/cache@v3, actions/setup-java@v3, nf-core/setup-nextflow@v1. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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nf-core-lint (netmhcstabpan)
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4, actions/cache@v3, actions/setup-java@v3, nf-core/setup-nextflow@v1. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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nf-core-lint (netmhcpan)
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4, actions/cache@v3, actions/setup-java@v3, nf-core/setup-nextflow@v1. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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nf-core-lint (neoantigenutils/neoantigeninput)
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4, actions/cache@v3, actions/setup-java@v3, nf-core/setup-nextflow@v1. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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nf-test (neoantigenutils/neoantigeninput, docker)
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-java@v3, nf-core/setup-nextflow@v1, actions/cache@v3, conda-incubator/setup-miniconda@v2. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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