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Merge pull request #130 from mskcc-omics-workflows/release/0.1.1 #634

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Merge pull request #130 from mskcc-omics-workflows/release/0.1.1

Merge pull request #130 from mskcc-omics-workflows/release/0.1.1 #634

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Job Run time
editorconfig
18s
editorconfig
18s
nf-test-changes
4s
nf-test-changes
4s
pre-commit
10s
pre-commit
10s
prettier
6s
prettier
6s
pytest-changes
3s
pytest-changes
3s
pytest
0s
pytest
0s
verify-markdown-file (subworkflows/phylowgs)
16s
verify-markdown-file (subworkflows/phylowgs)
16s
nf-core-lint (subworkflows/phylowgs)
55s
nf-core-lint (subworkflows/phylowgs)
55s
nf-core-lint (subworkflows/genome_nexus)
1m 21s
nf-core-lint (subworkflows/genome_nexus)
1m 21s
nf-test (subworkflows/phylowgs, docker)
2m 3s
nf-test (subworkflows/phylowgs, docker)
2m 3s
nf-core-lint (subworkflows/netmhcstabandpan)
44s
nf-core-lint (subworkflows/netmhcstabandpan)
44s
nf-test (subworkflows/phylowgs, singularity)
2m 46s
nf-test (subworkflows/phylowgs, singularity)
2m 46s
verify-markdown-file (subworkflows/genome_nexus)
13s
verify-markdown-file (subworkflows/genome_nexus)
13s
nf-core-lint (subworkflows/neoantigen_editing)
49s
nf-core-lint (subworkflows/neoantigen_editing)
49s
nf-test (subworkflows/genome_nexus, docker)
1m 50s
nf-test (subworkflows/genome_nexus, docker)
1m 50s
verify-markdown-file (subworkflows/netmhcstabandpan)
18s
verify-markdown-file (subworkflows/netmhcstabandpan)
18s
nf-core-lint (subworkflows/traceback)
53s
nf-core-lint (subworkflows/traceback)
53s
nf-test (subworkflows/genome_nexus, singularity)
2m 40s
nf-test (subworkflows/genome_nexus, singularity)
2m 40s
verify-markdown-file (subworkflows/neoantigen_editing)
16s
verify-markdown-file (subworkflows/neoantigen_editing)
16s
nf-core-lint (facets)
1m 15s
nf-core-lint (facets)
1m 15s
nf-test (subworkflows/netmhcstabandpan, docker)
2m 21s
nf-test (subworkflows/netmhcstabandpan, docker)
2m 21s
verify-markdown-file (subworkflows/traceback)
18s
verify-markdown-file (subworkflows/traceback)
18s
nf-core-lint (snppileup)
1m 10s
nf-core-lint (snppileup)
1m 10s
nf-test (subworkflows/netmhcstabandpan, singularity)
3m 15s
nf-test (subworkflows/netmhcstabandpan, singularity)
3m 15s
verify-markdown-file (facets)
20s
verify-markdown-file (facets)
20s
nf-core-lint (genotypevariants/all)
3m 4s
nf-core-lint (genotypevariants/all)
3m 4s
nf-test (subworkflows/neoantigen_editing, docker)
1m 42s
nf-test (subworkflows/neoantigen_editing, docker)
1m 42s
verify-markdown-file (snppileup)
13s
verify-markdown-file (snppileup)
13s
nf-core-lint (salmon/index)
48s
nf-core-lint (salmon/index)
48s
nf-test (subworkflows/neoantigen_editing, singularity)
2m 34s
nf-test (subworkflows/neoantigen_editing, singularity)
2m 34s
verify-markdown-file (genotypevariants/all)
14s
verify-markdown-file (genotypevariants/all)
14s
nf-core-lint (salmon/quant)
49s
nf-core-lint (salmon/quant)
49s
nf-test (subworkflows/traceback, docker)
1m 49s
nf-test (subworkflows/traceback, docker)
1m 49s
verify-markdown-file (salmon/index)
21s
verify-markdown-file (salmon/index)
21s
nf-test (subworkflows/traceback, singularity)
3m 13s
nf-test (subworkflows/traceback, singularity)
3m 13s
nf-core-lint (phylowgs/createinput)
48s
nf-core-lint (phylowgs/createinput)
48s
verify-markdown-file (salmon/quant)
15s
verify-markdown-file (salmon/quant)
15s
nf-test (facets, docker)
2m 25s
nf-test (facets, docker)
2m 25s
nf-core-lint (phylowgs/multievolve)
49s
nf-core-lint (phylowgs/multievolve)
49s
verify-markdown-file (phylowgs/createinput)
13s
verify-markdown-file (phylowgs/createinput)
13s
nf-test (facets, singularity)
4m 23s
nf-test (facets, singularity)
4m 23s
nf-core-lint (phylowgs/parsecnvs)
57s
nf-core-lint (phylowgs/parsecnvs)
57s
verify-markdown-file (phylowgs/multievolve)
20s
verify-markdown-file (phylowgs/multievolve)
20s
nf-test (snppileup, docker)
3m 28s
nf-test (snppileup, docker)
3m 28s
nf-core-lint (phylowgs/writeresults)
55s
nf-core-lint (phylowgs/writeresults)
55s
nf-test (snppileup, singularity)
5m 35s
nf-test (snppileup, singularity)
5m 35s
verify-markdown-file (phylowgs/parsecnvs)
15s
verify-markdown-file (phylowgs/parsecnvs)
15s
nf-core-lint (gbcms)
52s
nf-core-lint (gbcms)
52s
nf-test (genotypevariants/all, docker)
2m 38s
nf-test (genotypevariants/all, docker)
2m 38s
verify-markdown-file (phylowgs/writeresults)
14s
verify-markdown-file (phylowgs/writeresults)
14s
nf-core-lint (neoantigenediting/aligntoiedb)
1m 6s
nf-core-lint (neoantigenediting/aligntoiedb)
1m 6s
nf-test (genotypevariants/all, singularity)
3m 27s
nf-test (genotypevariants/all, singularity)
3m 27s
verify-markdown-file (gbcms)
23s
verify-markdown-file (gbcms)
23s
nf-core-lint (neoantigenediting/computefitness)
49s
nf-core-lint (neoantigenediting/computefitness)
49s
nf-test (salmon/index, docker)
2m 2s
nf-test (salmon/index, docker)
2m 2s
verify-markdown-file (neoantigenediting/aligntoiedb)
13s
verify-markdown-file (neoantigenediting/aligntoiedb)
13s
nf-core-lint (neoantigenutils/formatnetmhcpan)
52s
nf-core-lint (neoantigenutils/formatnetmhcpan)
52s
nf-test (salmon/index, singularity)
2m 29s
nf-test (salmon/index, singularity)
2m 29s
verify-markdown-file (neoantigenediting/computefitness)
17s
verify-markdown-file (neoantigenediting/computefitness)
17s
nf-core-lint (neoantigenutils/convertannotjson)
54s
nf-core-lint (neoantigenutils/convertannotjson)
54s
nf-test (salmon/quant, docker)
1m 49s
nf-test (salmon/quant, docker)
1m 49s
verify-markdown-file (neoantigenutils/formatnetmhcpan)
16s
verify-markdown-file (neoantigenutils/formatnetmhcpan)
16s
nf-core-lint (neoantigenutils/generatemutfasta)
46s
nf-core-lint (neoantigenutils/generatemutfasta)
46s
nf-test (salmon/quant, singularity)
2m 22s
nf-test (salmon/quant, singularity)
2m 22s
verify-markdown-file (neoantigenutils/convertannotjson)
14s
verify-markdown-file (neoantigenutils/convertannotjson)
14s
nf-core-lint (neoantigenutils/generatehlastring)
50s
nf-core-lint (neoantigenutils/generatehlastring)
50s
nf-test (phylowgs/createinput, docker)
2m 15s
nf-test (phylowgs/createinput, docker)
2m 15s
verify-markdown-file (neoantigenutils/generatemutfasta)
18s
verify-markdown-file (neoantigenutils/generatemutfasta)
18s
nf-core-lint (neoantigenutils/neoantigeninput)
53s
nf-core-lint (neoantigenutils/neoantigeninput)
53s
nf-test (phylowgs/createinput, singularity)
3m 18s
nf-test (phylowgs/createinput, singularity)
3m 18s
verify-markdown-file (neoantigenutils/generatehlastring)
13s
verify-markdown-file (neoantigenutils/generatehlastring)
13s
nf-core-lint (polysolver)
51s
nf-core-lint (polysolver)
51s
nf-test (phylowgs/multievolve, docker)
2m 59s
nf-test (phylowgs/multievolve, docker)
2m 59s
verify-markdown-file (neoantigenutils/neoantigeninput)
14s
verify-markdown-file (neoantigenutils/neoantigeninput)
14s
nf-core-lint (custom/splitfastqbylane)
1m 7s
nf-core-lint (custom/splitfastqbylane)
1m 7s
nf-test (phylowgs/multievolve, singularity)
4m 2s
nf-test (phylowgs/multievolve, singularity)
4m 2s
verify-markdown-file (polysolver)
13s
verify-markdown-file (polysolver)
13s
nf-core-lint (netmhcpan)
51s
nf-core-lint (netmhcpan)
51s
nf-test (phylowgs/parsecnvs, docker)
2m 14s
nf-test (phylowgs/parsecnvs, docker)
2m 14s
nf-core-lint (mutect1)
52s
nf-core-lint (mutect1)
52s
verify-markdown-file (custom/splitfastqbylane)
14s
verify-markdown-file (custom/splitfastqbylane)
14s
nf-core-lint (netmhcstabpan)
55s
nf-core-lint (netmhcstabpan)
55s
verify-markdown-file (netmhcpan)
16s
verify-markdown-file (netmhcpan)
16s
nf-test (phylowgs/parsecnvs, singularity)
3m 1s
nf-test (phylowgs/parsecnvs, singularity)
3m 1s
verify-markdown-file (mutect1)
17s
verify-markdown-file (mutect1)
17s
nf-core-lint (genomenexus/annotationpipeline)
1m 0s
nf-core-lint (genomenexus/annotationpipeline)
1m 0s
nf-test (phylowgs/writeresults, docker)
2m 48s
nf-test (phylowgs/writeresults, docker)
2m 48s
verify-markdown-file (netmhcstabpan)
17s
verify-markdown-file (netmhcstabpan)
17s
nf-core-lint (genomenexus/vcf2maf)
1m 6s
nf-core-lint (genomenexus/vcf2maf)
1m 6s
nf-test (phylowgs/writeresults, singularity)
3m 9s
nf-test (phylowgs/writeresults, singularity)
3m 9s
nf-core-lint (rediscoverte)
56s
nf-core-lint (rediscoverte)
56s
verify-markdown-file (genomenexus/annotationpipeline)
14s
verify-markdown-file (genomenexus/annotationpipeline)
14s
nf-test (gbcms, docker)
1m 13s
nf-test (gbcms, docker)
1m 13s
nf-core-lint (pvmaf/tagtraceback)
52s
nf-core-lint (pvmaf/tagtraceback)
52s
verify-markdown-file (genomenexus/vcf2maf)
17s
verify-markdown-file (genomenexus/vcf2maf)
17s
nf-test (gbcms, singularity)
1m 37s
nf-test (gbcms, singularity)
1m 37s
verify-markdown-file (rediscoverte)
18s
verify-markdown-file (rediscoverte)
18s
nf-test (neoantigenediting/aligntoiedb, docker)
1m 53s
nf-test (neoantigenediting/aligntoiedb, docker)
1m 53s
nf-core-lint (pvmaf/concat)
50s
nf-core-lint (pvmaf/concat)
50s
nf-test (neoantigenediting/aligntoiedb, singularity)
3m 22s
nf-test (neoantigenediting/aligntoiedb, singularity)
3m 22s
verify-markdown-file (pvmaf/tagtraceback)
24s
verify-markdown-file (pvmaf/tagtraceback)
24s
nf-core-lint (ppflagfixer)
1m 2s
nf-core-lint (ppflagfixer)
1m 2s
nf-test (neoantigenediting/computefitness, docker)
1m 53s
nf-test (neoantigenediting/computefitness, docker)
1m 53s
verify-markdown-file (pvmaf/concat)
12s
verify-markdown-file (pvmaf/concat)
12s
verify-markdown-file (ppflagfixer)
11s
verify-markdown-file (ppflagfixer)
11s
nf-test (neoantigenediting/computefitness, singularity)
2m 47s
nf-test (neoantigenediting/computefitness, singularity)
2m 47s
nf-test (neoantigenutils/formatnetmhcpan, docker)
2m 42s
nf-test (neoantigenutils/formatnetmhcpan, docker)
2m 57s
nf-test (neoantigenutils/formatnetmhcpan, singularity)
4m 35s
nf-test (neoantigenutils/formatnetmhcpan, singularity)
3m 53s
nf-test (neoantigenutils/convertannotjson, docker)
1m 37s
nf-test (neoantigenutils/convertannotjson, docker)
1m 37s
nf-test (neoantigenutils/convertannotjson, singularity)
2m 9s
nf-test (neoantigenutils/convertannotjson, singularity)
2m 9s
nf-test (neoantigenutils/convertannotjson, conda)
1m 20s
nf-test (neoantigenutils/convertannotjson, conda)
1m 20s
nf-test (neoantigenutils/generatemutfasta, docker)
2m 35s
nf-test (neoantigenutils/generatemutfasta, docker)
2m 35s
nf-test (neoantigenutils/generatemutfasta, singularity)
3m 49s
nf-test (neoantigenutils/generatemutfasta, singularity)
3m 49s
nf-test (neoantigenutils/generatehlastring, docker)
2m 34s
nf-test (neoantigenutils/generatehlastring, docker)
2m 34s
nf-test (neoantigenutils/generatehlastring, singularity)
3m 53s
nf-test (neoantigenutils/generatehlastring, singularity)
3m 53s
nf-test (neoantigenutils/neoantigeninput, docker)
1m 28s
nf-test (neoantigenutils/neoantigeninput, docker)
1m 35s
nf-test (neoantigenutils/neoantigeninput, singularity)
2m 6s
nf-test (neoantigenutils/neoantigeninput, singularity)
2m 9s
nf-test (polysolver, docker)
8m 13s
nf-test (polysolver, docker)
8m 13s
nf-test (polysolver, singularity)
10m 36s
nf-test (polysolver, singularity)
10m 36s
nf-test (custom/splitfastqbylane, docker)
1m 30s
nf-test (custom/splitfastqbylane, docker)
1m 30s
nf-test (custom/splitfastqbylane, singularity)
1m 30s
nf-test (custom/splitfastqbylane, singularity)
1m 30s
nf-test (custom/splitfastqbylane, conda)
3m 42s
nf-test (custom/splitfastqbylane, conda)
3m 42s
nf-test (netmhcpan, docker)
6m 9s
nf-test (netmhcpan, docker)
6m 9s
nf-test (netmhcpan, singularity)
7m 6s
nf-test (netmhcpan, singularity)
7m 6s
nf-test (mutect1, docker)
1m 32s
nf-test (mutect1, docker)
1m 32s
nf-test (mutect1, singularity)
1m 32s
nf-test (mutect1, singularity)
1m 32s
nf-test (netmhcstabpan, docker)
9m 19s
nf-test (netmhcstabpan, docker)
9m 19s
nf-test (netmhcstabpan, singularity)
10m 11s
nf-test (netmhcstabpan, singularity)
10m 11s
nf-test (genomenexus/annotationpipeline, docker)
1m 53s
nf-test (genomenexus/annotationpipeline, docker)
1m 53s
nf-test (genomenexus/annotationpipeline, singularity)
2m 54s
nf-test (genomenexus/annotationpipeline, singularity)
2m 54s
nf-test (genomenexus/vcf2maf, docker)
2m 14s
nf-test (genomenexus/vcf2maf, docker)
2m 14s
nf-test (genomenexus/vcf2maf, singularity)
2m 30s
nf-test (genomenexus/vcf2maf, singularity)
2m 30s
nf-test (rediscoverte, docker)
1m 45s
nf-test (rediscoverte, docker)
1m 45s
nf-test (rediscoverte, singularity)
3m 56s
nf-test (rediscoverte, singularity)
3m 56s
nf-test (pvmaf/tagtraceback, docker)
2m 33s
nf-test (pvmaf/tagtraceback, docker)
2m 33s
nf-test (pvmaf/tagtraceback, singularity)
4m 41s
nf-test (pvmaf/tagtraceback, singularity)
4m 41s
nf-test (pvmaf/concat, docker)
2m 7s
nf-test (pvmaf/concat, docker)
2m 7s
nf-test (pvmaf/concat, singularity)
3m 25s
nf-test (pvmaf/concat, singularity)
3m 25s
nf-test (ppflagfixer, docker)
2m 18s
nf-test (ppflagfixer, docker)
2m 18s
nf-test (ppflagfixer, singularity)
4m 5s
nf-test (ppflagfixer, singularity)
4m 5s
confirm-pass
3s
confirm-pass
1s
8h 35m 47s