Flye v2.7
- Better assemblies of real (and comlpex) metagenomes
- New option to retain alternative haplotypes, rather than collapsing them (
--keep-haplotypes
) - PacBio HiFi mode
- Using Bam instead of Sam to reduce storage requirements and IO load
- Improved human assemblies
- Annotation of alternative contigs
- Better polishing quality for the newest ONT datasets
- Trestle module is disabled by default (use
--trestle
to enable) - Many big fixes and improvements