conda create --name dockstore-jupyterhub python=3.10
conda install -c conda-forge nodejs
conda upgrade -c conda-forge nodejs
npm install -g configurable-http-proxy
pip3 install jupyterhub==2.3.1
pip3 install oauthenticator==15.0.1
pip3 install jupyter-client==7.3.4
pip3 install jupyterlab==3.4.3
# This docker spawner allows for image to be specifed in in the url
git clone https://github.com/abessiari/dockerspawner.git -b dockstore
cd dockerspawner/
pip3 install -e .
# Generate config file or use the sample jupyterhub_config.py from this repo
# jupyterhub --generate-config -f jupyterhub_config.py
# You need to configure the hub ip. It needs to be public
c.JupyterHub.hub_ip = 'XXX.XXX.XXX.XXX'
# GUTHUB OAUTH For this callback to work: use 'ssh -L 8000:HUB_PUBLIC_IP:8000 username@HUB_PUBLIC_IP'
c.GitHubOAuthenticator.oauth_callback_url = 'http://localhost:8000/hub/oauth_callback'
c.GitHubOAuthenticator.client_id = 'XXX'
c.GitHubOAuthenticator.client_secret = 'XXX'
# Default image.
c.DockerSpawner.image = 'jupyterhub/singleuser:2.3.0'
sudo ~/miniconda3/envs/dockstore-jupyterhub/bin/jupyterhub -f jupyterhub_config.pyThis is the image that will be passed in the uri. Dockerhub will try to pull it. So it needs to be built locally where the hub resides. No need to push it to dockerhub.
git clone https://github.com/abessiari/juphub_hello.git
cd juphub_hello
docker build -t juphub-hello:main .
docker image list # make sure you see your imageModify SOME_USER with your username
Using browser acces at http://localhost:8000/user/SOME_USER/lab/tree/hello.ipynb?image=juphub-hello:main
If any trouble you may want cleanup and then restart jupyterhub
rm -rf jupyterhub.sqlite jupyterhub_cookie_secret
docker ps -a
docker rm -f jupyter-your-user-nameSee jupyterhub branch at https://github.com/abessiari/dockstore/tree/jupyterhub and https://github.com/abessiari/dockstore-ui2/tree/jupyterhub