GenePlast

Geneplast¹ is designed for evolutionary and plasticity analysis based on orthologous groups distribution in a given species tree. It implements the Bridge algorithm to determine the evolutionary root of a given gene based on its orthologs distribution.

Read more about it here

Footnotes

1. Dalmolin, JS R, Castro, AA M (2015). Geneplast: evolutionary rooting and plasticity inference. R package. ↩