Bump version to v0.1.8 for release

.github/workflows/main.yml

@@ -139,7 +139,7 @@ jobs:
           twine upload -u '${{ secrets.PYPI_USERNAME }}' -p '${{ secrets.PYPI_PASSWORD }}' dist/*
 
       - name: Publish GitHub release
-        uses: softprops/action-gh-release@v1
+        uses: softprops/action-gh-release@v2
         env:
           GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
         with:

CHANGELOG.md

@@ -7,6 +7,8 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0
 
 ## Unreleased
 
+## [v0.1.8](https://github.com/ivanwilliammd/iderare-pheno/releases/tag/v0.1.8) - 2024-04-06
+
 ## [v0.1.7](https://github.com/ivanwilliammd/iderare-pheno/releases/tag/v0.1.7) - 2024-04-06
 
 ## [v0.1.6](https://github.com/ivanwilliammd/iderare-pheno/releases/tag/v0.1.6) - 2024-04-06

README.md

@@ -1,21 +1,8 @@
-# [IDeRare-pheno](https://iderare-pheno.readthedocs.io/)
+# [IDeRare-Pheno](https://iderare-pheno.readthedocs.io/)
 
 <!-- start tagline -->
 
 IDeRare or "Indonesia Exome Rare Disease Variant Discovery Pipeline" is simple and ready to use variant discovery pipeline to discover rare disease variants from exome sequencing data.
-
-Interactive Webapps Implementation of **iderare_pheno.py** hosted at [Streamlit](https://bioinformatics-ivanwilliamharsono.streamlitapp.com/IDeRare_Pheno)
-
-This script is recommended if you would like to do conversion, linkage analysis, similarity scoring, and gene-disease recommendation based on the phenotype data provided at [clinical_data.txt](clinical_data.txt). Full feature : 
-1. Convert the phenotype data to HPO code (accept mixed SNOMED, LOINC, and HPO code)
-2. Similarity scoring of differential diagnosis
-3. Linkage analysis of differential diagnosis (accept mixed SNOMED, ICD-10, ORPHA, OMIM code), include dendrogram tree visualization.
-    - This should help clinician to **systematically doing work-up and excluding similar diagnosis together** based on the patient\'s phenotype.
-4. Gene and disease recommendation based on the phenotype data similarity scoring between **phenotype** and OMIM gene and disease databank.
-5. Linkage analysis of recommended causative gene and disease based on phenotype data (include dendrogram tree visualization).
-    - This should help clinician to **explore / enrich their differential diagnosis** based on the patient\'s phenotype.
-6. Example of the clinical data provided at [Clinical Information Example section](#clinical-information-example)
-
 <!-- end tagline -->
 
 <p align="center">
@@ -31,6 +18,8 @@ This script is recommended if you would like to do conversion, linkage analysis,
     <a href="https://github.com/ivanwilliammd/iderare-pheno/blob/main/LICENSE">
         <img alt="License" src="https://img.shields.io/github/license/ivanwilliammd/iderare-pheno.svg?color=blue&cachedrop">
     </a>
+    <a href="https://bioinformatics-ivanwilliamharsono.streamlit.app/IDeRare_Pheno">
+        <img alt="Streamlit" src="https://static.streamlit.io/badges/streamlit_badge_black_white.svg">
     <br/>
 </p>
 
@@ -39,6 +28,21 @@ This script is recommended if you would like to do conversion, linkage analysis,
 - [Documentation](https://iderare-pheno.readthedocs.io/)
 - [PyPI Package](https://pypi.org/project/iderare-pheno/)
 - [License](https://github.com/ivanwilliammd/iderare-pheno/blob/main/LICENSE)
+- Interactive Webapps Implementation of at [Streamlit](https://bioinformatics-ivanwilliamharsono.streamlitapp.com/IDeRare_Pheno)
+
+
+## What does it do?
+
+This script is recommended if you would like to do conversion, linkage analysis, similarity scoring, and gene-disease recommendation based on the phenotype data provided at [clinical_data.txt](clinical_data.txt). Full feature : 
+1. Convert the phenotype data to HPO code (accept mixed SNOMED, LOINC, and HPO code)
+2. Similarity scoring of differential diagnosis
+3. Linkage analysis of differential diagnosis (accept mixed SNOMED, ICD-10, ORPHA, OMIM code), include dendrogram tree visualization.
+    - This should help clinician to **systematically doing work-up and excluding similar diagnosis together** based on the patient\'s phenotype.
+4. Gene and disease recommendation based on the phenotype data similarity scoring between **phenotype** and OMIM gene and disease databank.
+5. Linkage analysis of recommended causative gene and disease based on phenotype data (include dendrogram tree visualization).
+    - This should help clinician to **explore / enrich their differential diagnosis** based on the patient\'s phenotype.
+6. Example of the clinical data provided at [Clinical Information Example section](#clinical-information-example)
+
 
 ## Installation
 

iderare_pheno/version.py

@@ -2,7 +2,7 @@
 _MINOR = "1"
 # On main and in a nightly release the patch should be one ahead of the last
 # released build.
-_PATCH = "7"
+_PATCH = "8"
 # This is mainly for nightly builds which have the suffix ".dev$DATE". See
 # https://semver.org/#is-v123-a-semantic-version for the semantics.
 _SUFFIX = ""