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2.38.0 #802

Merged
merged 32 commits into from
Jul 8, 2024
Merged

2.38.0 #802

merged 32 commits into from
Jul 8, 2024

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k1o0
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@k1o0 k1o0 commented Jul 8, 2024

features

  • Support running large pipeline jobs within multiple python environments
  • Extraction and QC of of task pause periods
  • Register animated GIF snapshots and tiff images
  • Load waveforms low level changes in spike sorting loader
  • Loading of additional channel object attributes (qc labels) in spike sorting loader
  • Stimulus times now extracted in a more robust manner

bugfixes

  • Fix in training plots when no trials in block

k1o0 and others added 30 commits May 29, 2024 14:29
@k1o0
Issue #712 - env property allows tasks to be filtered based on enviro…
2bc95b6 
…nment
@k1o0
Merge branch 'develop' into multiEnv
774f0e5
@k1o0
Merge branch 'develop' into multiEnv
ec8b1e8
@k1o0
Merge remote-tracking branch 'origin/snapshotGIF' into multiEnv
3cb4e13
@k1o0
sync_label function returns software dependent sync name
adff36a
@k1o0
Test _sync_label function
5bbe29a
@k1o0
Merge branch 'develop' into multiEnv
5686fcd
@k1o0
Merge branch 'develop' into multiEnv
73c912e
@k1o0
Support multi-depth imaging times extration (#787)
454f72f 
* Register rawImagingData.times; support multi-depth imaging times extraction
* Restore behaviour such that isintance(outputs, list) -> Complete; outputs is None -> Empty
* Tests for multi-depth sync
@mayofaulkner
Merge branch 'release/2.37.0' into develop
32d325a
@k1o0
Stim on extraction (#788)
db14a3e 
* Issue #775
* Handle no go trials
* Pre-6.2.5 trials extraction
* DeprecationWarning -> FutureWarning; extractor fixes; timeline trials extraction
@k1o0
Merge branch 'develop' into multiEnv
5eb627b
@chris-langfield @oliche
iblsort release (#792)
8e5d6f8 
* spike sorting loader - load waveforms low level changes

* allows the loading of additional channel object attributes (qc labels)

* wip iblsort task

---------

Co-authored-by: olivier <olivier.winter@hotmail.fr>
Co-authored-by: chris-langfield <christopher.langfield@internationalbrainlab.org>
@k1o0
Resolves #782
7406cae
@samupicard
Merge pull request #791 from int-brain-lab/frame_qc_fix
d3322c6 
Resolves #782
@k1o0
Assert nFrames key; remove bincount2D
d773c1e
@k1o0
Turn markdown into code with ibl_execute: False
8e46b74
@k1o0
Turn markdown into code with ibl_execute: False
c408f0a 
Ensure no cells executed

Ensure no cells executed

Ensure no cells executed
@k1o0
Ensure no cells executed
5c69a40
@k1o0
Merge branch 'imagingDocs' into docs
9f26989
@k1o0
Merge branch 'docs' into develop
8ae09e3
@k1o0
Format task_metrics.py docstrings
61a9d63
@k1o0
Merge branch 'docs' into develop
2f26c00
@k1o0
Add imagecodecs as requirement for registering tif snapshots
aaff749
@k1o0
Handle None collection
d8c037b
@k1o0
Fixes int-brain-lab/iblrig#637
aa64d66
@k1o0
Closes #799; Bug fix in training plots when no trials in block
46e7e30
@k1o0
Skip log test for py < 3.10
ab56547
@k1o0
Merge pull request #800 from int-brain-lab/qc_pause_periods
92291a4 
Fixes int-brain-lab/iblrig#637
@k1o0
Merge pull request #801 from int-brain-lab/multiEnv
6d3b6bc 
Multi env
@k1o0 k1o0 merged commit 3e80794 into master Jul 8, 2024
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4 participants
@k1o0 @mayofaulkner @chris-langfield @samupicard