Replace setup.py by pyproject.toml (#195)

* add pyproject.toml file

* move pytest config into pyproject.toml

* define package version only in pyproject.toml

* simplify test_sigpy_import() to pass CI pipeline

* delete version.py, setup.py, pytest.ini, MANIFEST.in files


---------

Co-authored-by: Patrick Schuenke <patrick.schuenke@gmail.com>

.github/workflows/push_pr.yml

@@ -39,10 +39,10 @@ jobs:
         shell: bash -l {0}
         run: |
           pip install .
-          pytest -m "not matlab_seq_comp and not sigpy" pypulseq/tests
+          pytest -m "not matlab_seq_comp and not sigpy"
       - name: Run pytest[sigpy]
         shell: bash -l {0}
         run: |
           pip install .[sigpy]
-          pytest -m "not matlab_seq_comp" pypulseq/tests
-        continue-on-error: true
+          pytest -m "not matlab_seq_comp"
+        continue-on-error: true

pyproject.toml

@@ -0,0 +1,54 @@
+[build-system]
+requires = ["setuptools>=61.0"]
+build-backend = "setuptools.build_meta"
+
+[project]
+name = "pypulseq"
+version = "1.4.2"
+authors = [{ name = "Keerthi Sravan Ravi", email = "ks3621@columbia.edu" }]
+maintainers = [
+  { name = "Bilal Tasdelen" },
+  { name = "Frank Ziljstra" },
+  { name = "Patrick Schuenke" },
+]
+description = "Pulseq in Python"
+readme = "README.md"
+license = { file = "LICENSE" }
+requires-python = ">=3.6.3"
+classifiers = [
+  "Programming Language :: Python :: 3",
+  "Operating System :: OS Independent",
+]
+dependencies = [
+  "coverage>=6.2",
+  "matplotlib>=3.5.2",
+  "numpy>=1.19.5",
+  "scipy>=1.8.1",
+]
+
+[project.optional-dependencies]
+sigpy = ["sigpy>=0.1.26"]
+test = ["pytest"]
+
+[project.urls]
+Homepage = "https://github.com/imr-framework/pypulseq"
+Issues = "https://github.com/imr-framework/pypulseq/issues"
+Documentation = "https://pypulseq.readthedocs.io/en/latest/"
+
+[tool.setuptools.packages.find]
+where = ["pypulseq"]
+
+[tool.setuptools.package-data]
+SAR = ["QGlobal.mat"]
+
+[tool.setuptools.dynamic]
+version = { attr = "version.__version__" }
+
+# PyTest section
+[tool.pytest.ini_options]
+testpaths = ["pypulseq/tests"]
+filterwarnings = ["error"]
+markers = [
+  "matlab_seq_comp: comparison with matlab generated sequence",
+  "sigpy: tests that require sigpy",
+]