v0.2.2

Force condition and group to be factors.

v0.2.1

Prevent warning if PERL5LIB empty.

v0.2.0

Many, many changes, of which the most important are:
New stages to add info to 3' ends about transposon annotation, continuous RNA-seq and region alignments.
Filter 3' end false positives based on polyA, primary and secondary hexamers and other annotation, like repeats, transposons, RNA-seq, etc...
Call multiple 3' end peaks in a single region.
Allow processing of large datasets.
Switch from Bio::DB::Sam to Bio::DB::HTS.
Run DESeq2 in parallel.
Ensure Ensembl database connections aren't lost.
Script to convert DETCT output to BioLayout Express3D format.

v0.1.70

Bug fix release. Don't check control and experimental conditions are alphanumeric because not enforced on conditions.

v0.1.69

Script to create analysis YAML files with all pairs of conditions.

v0.1.68

Bug fix release. Fold changes weren't calculated when control and experimental conditions specified.

v0.1.67

Allow specifying experiments with multiple groups (i.e. DESeq2 analyses with more than two factors).
Allow specifying control and experimental conditions (i.e. conditions for DESeq2 contrast).
Script for subtracting one DETCT output file from another by region.
Script for getting intersection of two DETCT output files by region.
Script for running fuzzy clustering on DETCT output.

v0.1.66

Optionally scale by row or column when making heatmap.

v0.1.65

Optionally suppress clustering of regions and/or conditions when making heatmap.

v0.1.64

Change default serialiser format from YAML to JSON.