Releases: iansealy/DETCT
v0.2.2
v0.2.1
v0.2.0
Many, many changes, of which the most important are:
New stages to add info to 3' ends about transposon annotation, continuous RNA-seq and region alignments.
Filter 3' end false positives based on polyA, primary and secondary hexamers and other annotation, like repeats, transposons, RNA-seq, etc...
Call multiple 3' end peaks in a single region.
Allow processing of large datasets.
Switch from Bio::DB::Sam to Bio::DB::HTS.
Run DESeq2 in parallel.
Ensure Ensembl database connections aren't lost.
Script to convert DETCT output to BioLayout Express3D format.
v0.1.70
v0.1.69
v0.1.68
v0.1.67
Allow specifying experiments with multiple groups (i.e. DESeq2 analyses with more than two factors).
Allow specifying control and experimental conditions (i.e. conditions for DESeq2 contrast).
Script for subtracting one DETCT output file from another by region.
Script for getting intersection of two DETCT output files by region.
Script for running fuzzy clustering on DETCT output.