Initial code import.

MANIFEST.SKIP

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+bin/quince_chiphmmnew
+tmp

dist.ini

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+name    = DETCT
+author  = James Morris <james.morris2@sanger.ac.uk>
+author  = Ian Sealy <ian.sealy@sanger.ac.uk>
+license = GPL_3
+copyright_holder = Genome Research Ltd
+copyright_year   = 2013
+version = 0.1.0
+
+[@Basic]
+[ExecDir]
+dir = script
+[FileFinder::ByName / ScriptNotR]
+dir = script
+skip = .*\.R$
+[ModuleBuild]
+[PodWeaver]
+finder = :InstallModules
+finder = ScriptNotR
+[PodCoverageTests]
+[PodSyntaxTests]
+[Test::Perl::Critic]
+[PerlTidy]
+[AutoPrereqs]
+[PkgVersion]
+[Test::Compile]

lib/DETCT.pm

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+## no critic (RequireUseStrict, RequireUseWarnings, RequireTidyCode)
+package DETCT;
+## use critic
+
+# ABSTRACT: Transcript Counting API
+
+## Author         : is1
+## Maintainer     : is1
+## Created        : 2012-09-18
+## Last commit by : $Author$
+## Last modified  : $Date$
+## Revision       : $Revision$
+## Repository URL : $HeadURL$
+
+use warnings;
+use strict;
+use autodie;
+use Carp;
+use Try::Tiny;
+
+1;