Merge pull request #738 from hpcugentbot/auto_update_modules_2024-09-…

…27_11-03 Auto Update Modules [27 September 2024, 11:03]
hpcugent · Sep 27, 2024 · 5bc893b · 5bc893b
2 parents f6f31a7 + 8241058
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diff --git a/mkdocs/docs/HPC/only/gent/available_software/data/json_data.json b/mkdocs/docs/HPC/only/gent/available_software/data/json_data.json
diff --git a/mkdocs/docs/HPC/only/gent/available_software/data/json_data_detail.json b/mkdocs/docs/HPC/only/gent/available_software/data/json_data_detail.json
diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/CUDA-Python.md b/mkdocs/docs/HPC/only/gent/available_software/detail/CUDA-Python.md
@@ -0,0 +1,24 @@
+---
+hide:
+  - toc
+---
+
+CUDA-Python
+===========
+
+# Available modules
+
+
+The overview below shows which CUDA-Python installations are available per HPC-UGent Tier-2 cluster, ordered based on software version (new to old).
+
+To start using CUDA-Python, load one of these modules using a `module load` command like:
+
+```shell
+module load CUDA-Python/12.1.0-gfbf-2023a-CUDA-12.1.1
+```
+
+*(This data was automatically generated on {{modules_last_updated}})*  
+
+| |accelgor|doduo|donphan|gallade|joltik|shinx|skitty|
+| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
+|CUDA-Python/12.1.0-gfbf-2023a-CUDA-12.1.1|x|-|x|-|x|-|-|
diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/FLUENT.md b/mkdocs/docs/HPC/only/gent/available_software/detail/FLUENT.md
@@ -21,7 +21,7 @@ module load FLUENT/2024R2
 
 | |accelgor|doduo|donphan|gallade|joltik|shinx|skitty|
 | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
-|FLUENT/2024R2|-|-|x|-|x|x|-|
+|FLUENT/2024R2|x|x|x|x|x|x|x|
 |FLUENT/2024R1|x|x|x|x|x|-|x|
 |FLUENT/2023R1|x|x|x|x|x|-|x|
 |FLUENT/2022R1|-|x|x|-|x|-|x|

diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/HTSplotter.md b/mkdocs/docs/HPC/only/gent/available_software/detail/HTSplotter.md
@@ -14,12 +14,13 @@ The overview below shows which HTSplotter installations are available per HPC-UG
 To start using HTSplotter, load one of these modules using a `module load` command like:
 
 ```shell
-module load HTSplotter/2.11-foss-2022b
+module load HTSplotter/2.11-foss-2023a
 ```
 
 *(This data was automatically generated on {{modules_last_updated}})*  
 
 | |accelgor|doduo|donphan|gallade|joltik|shinx|skitty|
 | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
+|HTSplotter/2.11-foss-2023a|x|x|x|x|x|x|x|
 |HTSplotter/2.11-foss-2022b|x|x|x|x|x|-|x|
 |HTSplotter/0.15-foss-2022a|x|x|x|x|x|-|x|
diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/ISA-L.md b/mkdocs/docs/HPC/only/gent/available_software/detail/ISA-L.md
@@ -21,7 +21,7 @@ module load ISA-L/2.31.0-GCCcore-13.2.0
 
 | |accelgor|doduo|donphan|gallade|joltik|shinx|skitty|
 | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
-|ISA-L/2.31.0-GCCcore-13.2.0|x|x|x|-|x|x|x|
+|ISA-L/2.31.0-GCCcore-13.2.0|x|x|x|x|x|x|x|
 |ISA-L/2.30.0-GCCcore-12.3.0|x|x|x|x|x|x|x|
 |ISA-L/2.30.0-GCCcore-11.3.0|x|x|x|x|x|-|x|
 |ISA-L/2.30.0-GCCcore-11.2.0|x|x|x|-|x|-|x|

diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/SSW.md b/mkdocs/docs/HPC/only/gent/available_software/detail/SSW.md
@@ -14,11 +14,12 @@ The overview below shows which SSW installations are available per HPC-UGent Tie
 To start using SSW, load one of these modules using a `module load` command like:
 
 ```shell
-module load SSW/1.1-GCCcore-10.2.0
+module load SSW/1.1-GCCcore-12.3.0
 ```
 
 *(This data was automatically generated on {{modules_last_updated}})*  
 
 | |accelgor|doduo|donphan|gallade|joltik|shinx|skitty|
 | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
+|SSW/1.1-GCCcore-12.3.0|x|x|x|x|x|x|x|
 |SSW/1.1-GCCcore-10.2.0|-|x|x|-|x|-|x|
diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/SeqLib.md b/mkdocs/docs/HPC/only/gent/available_software/detail/SeqLib.md
@@ -14,11 +14,12 @@ The overview below shows which SeqLib installations are available per HPC-UGent
 To start using SeqLib, load one of these modules using a `module load` command like:
 
 ```shell
-module load SeqLib/1.2.0-GCC-10.2.0
+module load SeqLib/1.2.0-GCC-12.3.0
 ```
 
 *(This data was automatically generated on {{modules_last_updated}})*  
 
 | |accelgor|doduo|donphan|gallade|joltik|shinx|skitty|
 | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
+|SeqLib/1.2.0-GCC-12.3.0|x|x|x|x|x|x|x|
 |SeqLib/1.2.0-GCC-10.2.0|-|x|x|-|x|-|-|
diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/VCFtools.md b/mkdocs/docs/HPC/only/gent/available_software/detail/VCFtools.md
@@ -22,4 +22,5 @@ module load VCFtools/0.1.16-iccifort-2019.5.281
 | |accelgor|doduo|donphan|gallade|joltik|shinx|skitty|
 | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
 |VCFtools/0.1.16-iccifort-2019.5.281|-|x|x|-|x|-|x|
+|VCFtools/0.1.16-GCC-12.3.0|x|x|x|x|x|x|x|
 |VCFtools/0.1.16-GCC-10.2.0|-|x|x|-|x|-|-|
diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/WFA2.md b/mkdocs/docs/HPC/only/gent/available_software/detail/WFA2.md
@@ -14,11 +14,12 @@ The overview below shows which WFA2 installations are available per HPC-UGent Ti
 To start using WFA2, load one of these modules using a `module load` command like:
 
 ```shell
-module load WFA2/2.3.3-GCCcore-11.3.0
+module load WFA2/2.3.4-GCCcore-12.3.0
 ```
 
 *(This data was automatically generated on {{modules_last_updated}})*  
 
 | |accelgor|doduo|donphan|gallade|joltik|shinx|skitty|
 | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
+|WFA2/2.3.4-GCCcore-12.3.0|x|x|x|x|x|x|x|
 |WFA2/2.3.3-GCCcore-11.3.0|x|x|x|x|x|-|x|
diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/code-cli.md b/mkdocs/docs/HPC/only/gent/available_software/detail/code-cli.md
@@ -14,11 +14,12 @@ The overview below shows which code-cli installations are available per HPC-UGen
 To start using code-cli, load one of these modules using a `module load` command like:
 
 ```shell
-module load code-cli/1.85.1-x64
+module load code-cli/1.93.1-x64
 ```
 
 *(This data was automatically generated on {{modules_last_updated}})*  
 
 | |accelgor|doduo|donphan|gallade|joltik|shinx|skitty|
 | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
+|code-cli/1.93.1-x64|x|x|x|x|x|x|x|
 |code-cli/1.85.1-x64|x|x|x|x|x|-|x|
diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/code-server.md b/mkdocs/docs/HPC/only/gent/available_software/detail/code-server.md
@@ -14,11 +14,12 @@ The overview below shows which code-server installations are available per HPC-U
 To start using code-server, load one of these modules using a `module load` command like:
 
 ```shell
-module load code-server/4.9.1
+module load code-server/4.93.1
 ```
 
 *(This data was automatically generated on {{modules_last_updated}})*  
 
 | |accelgor|doduo|donphan|gallade|joltik|shinx|skitty|
 | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
+|code-server/4.93.1|x|x|x|x|x|x|x|
 |code-server/4.9.1|x|x|x|x|x|-|x|
diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/fastahack.md b/mkdocs/docs/HPC/only/gent/available_software/detail/fastahack.md
@@ -14,12 +14,13 @@ The overview below shows which fastahack installations are available per HPC-UGe
 To start using fastahack, load one of these modules using a `module load` command like:
 
 ```shell
-module load fastahack/1.0.0-GCCcore-11.3.0
+module load fastahack/1.0.0-GCCcore-12.3.0
 ```
 
 *(This data was automatically generated on {{modules_last_updated}})*  
 
 | |accelgor|doduo|donphan|gallade|joltik|shinx|skitty|
 | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
+|fastahack/1.0.0-GCCcore-12.3.0|x|x|x|x|x|x|x|
 |fastahack/1.0.0-GCCcore-11.3.0|x|x|x|x|x|-|x|
 |fastahack/1.0.0-GCCcore-10.2.0|-|x|x|-|x|-|x|
diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/fastp.md b/mkdocs/docs/HPC/only/gent/available_software/detail/fastp.md
@@ -21,8 +21,8 @@ module load fastp/0.23.4-GCC-13.2.0
 
 | |accelgor|doduo|donphan|gallade|joltik|shinx|skitty|
 | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
-|fastp/0.23.4-GCC-13.2.0|x|x|x|-|x|x|x|
-|fastp/0.23.4-GCC-12.3.0|x|x|x|-|x|x|x|
+|fastp/0.23.4-GCC-13.2.0|x|x|x|x|x|x|x|
+|fastp/0.23.4-GCC-12.3.0|x|x|x|x|x|x|x|
 |fastp/0.23.2-GCC-11.2.0|x|x|x|-|x|-|x|
 |fastp/0.20.1-iccifort-2020.1.217|-|x|x|-|x|-|-|
 |fastp/0.20.0-iccifort-2019.5.281|-|x|-|-|-|-|-|

diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/fermi-lite.md b/mkdocs/docs/HPC/only/gent/available_software/detail/fermi-lite.md
@@ -14,11 +14,12 @@ The overview below shows which fermi-lite installations are available per HPC-UG
 To start using fermi-lite, load one of these modules using a `module load` command like:
 
 ```shell
-module load fermi-lite/20190320-GCCcore-10.2.0
+module load fermi-lite/20190320-GCCcore-12.3.0
 ```
 
 *(This data was automatically generated on {{modules_last_updated}})*  
 
 | |accelgor|doduo|donphan|gallade|joltik|shinx|skitty|
 | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
+|fermi-lite/20190320-GCCcore-12.3.0|x|x|x|x|x|x|x|
 |fermi-lite/20190320-GCCcore-10.2.0|-|x|x|-|x|-|x|
diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/filevercmp.md b/mkdocs/docs/HPC/only/gent/available_software/detail/filevercmp.md
@@ -14,12 +14,13 @@ The overview below shows which filevercmp installations are available per HPC-UG
 To start using filevercmp, load one of these modules using a `module load` command like:
 
 ```shell
-module load filevercmp/20191210-GCCcore-11.3.0
+module load filevercmp/20191210-GCCcore-12.3.0
 ```
 
 *(This data was automatically generated on {{modules_last_updated}})*  
 
 | |accelgor|doduo|donphan|gallade|joltik|shinx|skitty|
 | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
+|filevercmp/20191210-GCCcore-12.3.0|x|x|x|x|x|x|x|
 |filevercmp/20191210-GCCcore-11.3.0|x|x|x|x|x|-|x|
 |filevercmp/20191210-GCCcore-10.2.0|-|x|x|-|x|-|x|
diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/freebayes.md b/mkdocs/docs/HPC/only/gent/available_software/detail/freebayes.md
@@ -14,11 +14,12 @@ The overview below shows which freebayes installations are available per HPC-UGe
 To start using freebayes, load one of these modules using a `module load` command like:
 
 ```shell
-module load freebayes/1.3.5-GCC-10.2.0
+module load freebayes/1.3.7-gfbf-2023a-R-4.3.2
 ```
 
 *(This data was automatically generated on {{modules_last_updated}})*  
 
 | |accelgor|doduo|donphan|gallade|joltik|shinx|skitty|
 | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
+|freebayes/1.3.7-gfbf-2023a-R-4.3.2|x|x|x|x|x|x|x|
 |freebayes/1.3.5-GCC-10.2.0|-|x|x|-|x|-|-|
diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/fsom.md b/mkdocs/docs/HPC/only/gent/available_software/detail/fsom.md
@@ -14,12 +14,13 @@ The overview below shows which fsom installations are available per HPC-UGent Ti
 To start using fsom, load one of these modules using a `module load` command like:
 
 ```shell
-module load fsom/20151117-GCCcore-11.3.0
+module load fsom/20151117-GCCcore-12.3.0
 ```
 
 *(This data was automatically generated on {{modules_last_updated}})*  
 
 | |accelgor|doduo|donphan|gallade|joltik|shinx|skitty|
 | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
+|fsom/20151117-GCCcore-12.3.0|x|x|x|x|x|x|x|
 |fsom/20151117-GCCcore-11.3.0|x|x|x|x|x|-|x|
 |fsom/20141119-GCCcore-10.2.0|-|x|x|-|x|-|x|
diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/intervaltree.md b/mkdocs/docs/HPC/only/gent/available_software/detail/intervaltree.md
@@ -14,12 +14,13 @@ The overview below shows which intervaltree installations are available per HPC-
 To start using intervaltree, load one of these modules using a `module load` command like:
 
 ```shell
-module load intervaltree/0.1-GCCcore-11.3.0
+module load intervaltree/0.1-GCCcore-12.3.0
 ```
 
 *(This data was automatically generated on {{modules_last_updated}})*  
 
 | |accelgor|doduo|donphan|gallade|joltik|shinx|skitty|
 | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
+|intervaltree/0.1-GCCcore-12.3.0|x|x|x|x|x|x|x|
 |intervaltree/0.1-GCCcore-11.3.0|x|x|x|x|x|-|x|
 |intervaltree/0.1-GCCcore-10.2.0|-|x|x|-|x|-|x|
diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/multichoose.md b/mkdocs/docs/HPC/only/gent/available_software/detail/multichoose.md
@@ -14,12 +14,13 @@ The overview below shows which multichoose installations are available per HPC-U
 To start using multichoose, load one of these modules using a `module load` command like:
 
 ```shell
-module load multichoose/1.0.3-GCCcore-11.3.0
+module load multichoose/1.0.3-GCCcore-12.3.0
 ```
 
 *(This data was automatically generated on {{modules_last_updated}})*  
 
 | |accelgor|doduo|donphan|gallade|joltik|shinx|skitty|
 | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
+|multichoose/1.0.3-GCCcore-12.3.0|x|x|x|x|x|x|x|
 |multichoose/1.0.3-GCCcore-11.3.0|x|x|x|x|x|-|x|
 |multichoose/1.0.3-GCCcore-10.2.0|-|x|x|-|x|-|x|
diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/ont-remora.md b/mkdocs/docs/HPC/only/gent/available_software/detail/ont-remora.md
@@ -0,0 +1,24 @@
+---
+hide:
+  - toc
+---
+
+ont-remora
+==========
+
+# Available modules
+
+
+The overview below shows which ont-remora installations are available per HPC-UGent Tier-2 cluster, ordered based on software version (new to old).
+
+To start using ont-remora, load one of these modules using a `module load` command like:
+
+```shell
+module load ont-remora/3.3.0-foss-2023a
+```
+
+*(This data was automatically generated on {{modules_last_updated}})*  
+
+| |accelgor|doduo|donphan|gallade|joltik|shinx|skitty|
+| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
+|ont-remora/3.3.0-foss-2023a|x|x|x|x|x|x|x|
diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/smithwaterman.md b/mkdocs/docs/HPC/only/gent/available_software/detail/smithwaterman.md
@@ -14,12 +14,13 @@ The overview below shows which smithwaterman installations are available per HPC
 To start using smithwaterman, load one of these modules using a `module load` command like:
 
 ```shell
-module load smithwaterman/20160702-GCCcore-11.3.0
+module load smithwaterman/20160702-GCCcore-12.3.0
 ```
 
 *(This data was automatically generated on {{modules_last_updated}})*  
 
 | |accelgor|doduo|donphan|gallade|joltik|shinx|skitty|
 | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
+|smithwaterman/20160702-GCCcore-12.3.0|x|x|x|x|x|x|x|
 |smithwaterman/20160702-GCCcore-11.3.0|x|x|x|x|x|-|x|
 |smithwaterman/20160702-GCCcore-10.2.0|-|x|x|-|x|-|x|
diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/tabixpp.md b/mkdocs/docs/HPC/only/gent/available_software/detail/tabixpp.md
@@ -14,12 +14,13 @@ The overview below shows which tabixpp installations are available per HPC-UGent
 To start using tabixpp, load one of these modules using a `module load` command like:
 
 ```shell
-module load tabixpp/1.1.2-GCC-11.3.0
+module load tabixpp/1.1.2-GCC-12.3.0
 ```
 
 *(This data was automatically generated on {{modules_last_updated}})*  
 
 | |accelgor|doduo|donphan|gallade|joltik|shinx|skitty|
 | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
+|tabixpp/1.1.2-GCC-12.3.0|x|x|x|x|x|x|x|
 |tabixpp/1.1.2-GCC-11.3.0|x|x|x|x|x|-|x|
 |tabixpp/1.1.0-GCC-10.2.0|-|x|x|-|x|-|x|
diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/vcflib.md b/mkdocs/docs/HPC/only/gent/available_software/detail/vcflib.md
@@ -14,12 +14,13 @@ The overview below shows which vcflib installations are available per HPC-UGent
 To start using vcflib, load one of these modules using a `module load` command like:
 
 ```shell
-module load vcflib/1.0.9-foss-2022a-R-4.2.1
+module load vcflib/1.0.9-gfbf-2023a-R-4.3.2
 ```
 
 *(This data was automatically generated on {{modules_last_updated}})*  
 
 | |accelgor|doduo|donphan|gallade|joltik|shinx|skitty|
 | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
+|vcflib/1.0.9-gfbf-2023a-R-4.3.2|x|x|x|x|x|x|x|
 |vcflib/1.0.9-foss-2022a-R-4.2.1|x|x|x|x|x|-|x|
 |vcflib/1.0.2-GCC-10.2.0|-|x|x|-|x|-|x|
diff --git a/mkdocs/extra/gent.yml b/mkdocs/extra/gent.yml
@@ -16,7 +16,7 @@ hpcname: hpcugent
 loginnode: login.hpc.ugent.be
 loginhost: gligar07.gastly.os
 altloginhost: gligar08.gastly.os
-modules_last_updated: Wed, 25 Sep 2024 at 11:04:20 CEST # This line is automatically updated by scripts/available_modules/available_modules.py
+modules_last_updated: Fri, 27 Sep 2024 at 11:04:20 CEST # This line is automatically updated by scripts/available_modules/available_modules.py
 # get these with ssh-keyscan gligar01.ugent.be > file
 # ssh-keygen -l -f file
 # ssh-keygen -l -f file -E md5