Merge pull request #9 from griffithlab/setup-leanpub #5
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| # It was adapted by Candace Savonen for the OTTR_template https://github.com/jhudsl/OTTR_Template. | |
| # This code was adapted by Carrie Wright to enable automated rendering of the site associated with this repository | |
| name: Render html | |
| # Controls when the action will run. Triggers the workflow on push | |
| # events only for the master branch | |
| on: | |
| workflow_dispatch: | |
| push: | |
| branches: [ main ] | |
| paths: | |
| - '**.Rmd' | |
| - styles.css | |
| - _site.yml | |
| - subdir_html/*.Rmd | |
| - resources/images/*.png | |
| - resources/images/favicon.ico | |
| - site_libs/* | |
| jobs: | |
| yaml-check: | |
| name: Load user automation choices | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@v3 | |
| # Use the yaml-env-action action. | |
| - name: Load environment from YAML | |
| uses: doughepi/yaml-env-action@v1.0.0 | |
| with: | |
| files: config_automation.yml # Pass a space-separated list of configuration files. Rightmost files take precedence. | |
| outputs: | |
| rendering_docker_image: "${{ env.RENDERING_DOCKER_IMAGE }}" | |
| # This workflow contains a single job called "build-all" | |
| render-main: | |
| needs: yaml-check | |
| runs-on: ubuntu-latest | |
| container: | |
| image: ${{needs.yaml-check.outputs.rendering_docker_image}} | |
| # Steps represent a sequence of tasks that will be executed as part of the job | |
| steps: | |
| # Checks-out your repository under $GITHUB_WORKSPACE, so your job can access it | |
| - name: checkout | |
| uses: actions/checkout@v3 | |
| with: | |
| # get the full repo | |
| fetch-depth: 0 | |
| # use github PAT | |
| token: ${{ secrets.GH_PAT }} | |
| # We want a fresh run of the renders each time - so first delete old html files | |
| - name: Delete old *.html | |
| run: Rscript -e "rmarkdown::clean_site(preview = FALSE)" | |
| # Now we want to render all the html files from the Rmd files | |
| - name: Run render html | |
| id: site | |
| run: Rscript -e "rmarkdown::render_site()" | |
| # We may have html files that we want to render to add as links on the pages -these will be stored in a dir called subdir_html | |
| - name: Render subdir_html | |
| id: subdir_html | |
| run: Rscript -e "for (i in list.files(path = './subdir_html', pattern = 'Rmd$', recursive = TRUE, full.names = TRUE)){rmarkdown::render(i)}" | |
| # This checks on the steps before it and makes sure that they completed. | |
| # If the renders didn't complete we don't want to commit the file changes | |
| - name: Check on render steps | |
| if: steps.site.outcome != 'success' | |
| run: | | |
| echo site status ${{steps.site.outcome}} | |
| exit 1 | |
| # Commit the rendered site files - html files and site_libs files | |
| - name: Commit rendered site files | |
| run: | | |
| git config --system --add safe.directory $GITHUB_WORKSPACE | |
| git config --local user.email "actions@github.com" | |
| git config --local user.name "GitHub Actions" | |
| git add --force *.html | |
| git add --force subdir_html/*.html | |
| git add --force site_libs/* | |
| git commit -m 'Render site' || echo "No changes to commit" | |
| git push origin main || echo "No changes to push" |