Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

feat: add cigar utility method get_alignment_offsets #188

Open
wants to merge 7 commits into
base: main
Choose a base branch
from
Open

feat: add cigar utility method get_alignment_offsets #188

wants to merge 7 commits into from

Commits on Sep 19, 2024

  1. - add cigar utility method get_alignment_offsets to find the offsets … 

    …of the aligned segment in the read

- tests included
    @yfarjoun
    yfarjoun committed Sep 19, 2024
    Configuration menu
    Copy the full SHA
    961990a View commit details
    Browse the repository at this point in the history

  2. Update fgpyo/sam/__init__.py 

    Co-authored-by: Matt Stone <matt@fulcrumgenomics.com>
    @yfarjoun @msto
    yfarjoun and msto committed Sep 19, 2024
    Configuration menu
    Copy the full SHA
    ddf1ef5 View commit details
    Browse the repository at this point in the history

  3. Update tests/fgpyo/sam/test_cigar.py 

    Co-authored-by: Matt Stone <matt@fulcrumgenomics.com>
    @yfarjoun @msto
    yfarjoun and msto committed Sep 19, 2024
    Configuration menu
    Copy the full SHA
    4fa85d6 View commit details
    Browse the repository at this point in the history

  4. - responded to review comments.

    @yfarjoun
    yfarjoun committed Sep 19, 2024
    Configuration menu
    Copy the full SHA
    f371b6c View commit details
    Browse the repository at this point in the history

  5. responding to review comments

    @yfarjoun
    yfarjoun committed Sep 19, 2024
    Configuration menu
    Copy the full SHA
    e041787 View commit details
    Browse the repository at this point in the history

  6. docs

    @yfarjoun
    yfarjoun committed Sep 19, 2024
    Configuration menu
    Copy the full SHA
    b07c3e4 View commit details
    Browse the repository at this point in the history

  7. rename

    @yfarjoun
    yfarjoun committed Sep 19, 2024
    Configuration menu
    Copy the full SHA
    c334b43 View commit details
    Browse the repository at this point in the history