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DOC: tiny README fixes
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fedarko committed Sep 1, 2023
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Expand Up @@ -34,8 +34,8 @@ wotplot.viz_imshow(m)

### Larger dataset: comparing two _E. coli_ genomes

Using _E. coli_ K-12 [(from this assembly)](https://www.ncbi.nlm.nih.gov/datasets/genome/GCF_000005845.2/)
and _E. coli_ O157:H7 [(from this assembly)](https://www.ncbi.nlm.nih.gov/datasets/genome/GCF_000008865.2/).
Using _E. coli_ K-12 ([from this assembly](https://www.ncbi.nlm.nih.gov/datasets/genome/GCF_000005845.2/))
and _E. coli_ O157:H7 ([from this assembly](https://www.ncbi.nlm.nih.gov/datasets/genome/GCF_000008865.2/)).
I removed the two plasmid sequences from the O157:H7 assembly.

```python
Expand All @@ -44,7 +44,7 @@ I removed the two plasmid sequences from the O157:H7 assembly.
# Create the matrix
em = wotplot.DotPlotMatrix(e1s, e2s, 20, verbose=True)

# Visualize it using matplotlib.spy()
# Visualize the matrix using matplotlib.spy()
fig, ax = pyplot.subplots()
wotplot.viz_spy(
em, markersize=0.01, title="Comparison of two $E. coli$ genomes ($k$ = 20)", ax=ax
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