Merge pull request #315 from debbiemarkslab/develop #143
Workflow file for this run
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| name: build_and_test | |
| on: [push, pull_request] | |
| jobs: | |
| build: | |
| runs-on: ubuntu-latest | |
| strategy: | |
| matrix: | |
| python-version: ['3.10', '3.11'] | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Install and configure conda | |
| run: | | |
| wget https://repo.continuum.io/miniconda/Miniconda3-latest-Linux-x86_64.sh -O miniconda.sh | |
| bash miniconda.sh -b -p $HOME/miniconda | |
| export PATH="$HOME/miniconda/bin:$PATH" | |
| hash -r | |
| conda config --set always_yes yes --set changeps1 no | |
| conda update -q conda | |
| conda info -a | |
| conda create -q -n test-environment python=${{ matrix.python-version }} numpy scipy numba pandas matplotlib | |
| source activate test-environment | |
| - name: Run setup.py | |
| run: | | |
| pip install build | |
| python setup.py sdist --formats=zip -k | |
| python -m build | |
| find ./dist -iname "*.zip" -print0 | xargs -0 pip install | |
| pip install codecov | |
| - name: Download test files | |
| run: | | |
| wget https://marks.hms.harvard.edu/evcouplings_test_cases/data/evcouplings_test_cases.tar.gz | |
| tar -xf evcouplings_test_cases.tar.gz -C $HOME/ | |
| - name: Run tests in headless xvfb environment | |
| uses: coactions/setup-xvfb@v1 | |
| with: | |
| run: coverage run -m unittest discover -s test -p "Test*.py" | |
| working-directory: ./ #optional |