fix Snakefile [ci skip]

davidebolo1993 · Mar 13, 2024 · 14a4390 · 14a4390
1 parent f51565a
commit 14a4390
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/cosigt_smk/workflow/Snakefile b/cosigt_smk/workflow/Snakefile
@@ -17,4 +17,4 @@ include: 'rules/cosigt.smk'
 
 rule cosigt:
 	input:
-		expand('results/cosigt/{sample}/{region}/best_genotype.tsv', sample=df['sample_id'].tolist(), region=config['region'])
+		expand(config['output'] + '/cosigt/{sample}/{region}/best_genotype.tsv', sample=df['sample_id'].tolist(), region=config['region'])