0.7.0

What's Changed

• Multi plane caiman by @ttngu207 in #88
• Add multi-plane caiman image processing by @kushalbakshi in #99
• Bugfix - remove hardcoded n_fields from prairie_view_loader.py by @kushalbakshi in #101
• Dev memoized results by @ttngu207 in #102
• feat: handle PrairieView new multi-page tif format by @ttngu207 in #108
• Primarily fixing suite2p loader for missing ROI detection or trace extraction - pulling from staging for other minor updates by @ttngu207 in #109
• Fix(suite2p_loader): Return nan array if "VCorr" not in suite2p output by @kushalbakshi in #110
• Dev memoized results by @ttngu207 in #111
• Check for bruker-generated multi_tiff by @kushalbakshi in #107
• Update multiprocessing arguments to latest versions by @kushalbakshi in #112
• Update CaImAn utilities for compatibility with latest CaImAn by @kushalbakshi in #113
• update: deprecate "caiman_compatible" argument by @ttngu207 in #114
• fix: additional safeguard to close the file and delete the tffl object by @ttngu207 in #115
• feat: add use_cuda for caiman by @ttngu207 in #116
• feat: set gb_per_file and write multiple bigtiff by @ttngu207 in #117
• fix: incorrect dimension ordering for single-plane caimain loading by @ttngu207 in #118
• feat(run_caiman): use output_dir for CAIMAN_TEMP by @ttngu207 in #119
• Add memoized_result + update calcium imaging utility functions by @kushalbakshi in #121

Full Changelog: 0.6.1...0.7.0

Release 0.6.1

• Update DANDI upload funtionality to improve useability

Release 0.6.0

• Update - prairieviewreader.py -> prairie_view_loader.py
• Update - get_pv_metadata() -> get_prairieview_metadata()
• Update - Internal variable names within prairie_view_loader.py

Release 0.5.4

• Fix - DANDI URL for uploads where staging=False.
• Fix - Docs to remote Google Analytics Key and add Markdown extensions

Release 0.5.3

• Fix - .ipynb dark mode output for all notebooks.
• Fix - Remove GOOGLE_ANALYTICS_KEY from u24_element_release_call.yml.

Release 0.5.1

• Fix - ingestion routine for multiple Z devices in prairieviewreader.py.

Release 0.5.0

• Remove - recursive_search function
• Add - pre-commit checks to the repo to observe flake8, black, isort
• Add - value_to_bool and QuietStdOut utilities

Release 0.4.1

• Update - PrairieView loader now reads recording start time from metadata file

Release 0.4.0

• Add - mkdocs documentation
• Add - improved docstrings for mkdocs
• Add - EXTRACT trigger and loader tools

Release 0.3.0

• Add - Function prairieviewreader to parse metadata from Bruker PrarieView acquisition system
• Update - Changelog with tag links