Merge pull request #78 from coecms/install_ecmwf_api_client

Install ecmwf api client

environments/analysis3/environment.yml

@@ -3,7 +3,6 @@ channels:
 - coecms
 - conda-forge
 - accessnri
-- anaconda
 variables:
   CARTOPY_USER_BACKGROUNDS: /g/data/hh5/public/apps/cartopy-data/backgrounds
 dependencies:
@@ -69,7 +68,7 @@ dependencies:
 - matplotlib
 #- matplotlib>=3.5.2|<=3.4.3  # pinned to solve  https://github.com/matplotlib/matplotlib/issues/21917
 - dreqpy
-- pint<0.24 ### https://github.com/Ouranosinc/xclim/issues/1771
+- pint ###<0.24 ### https://github.com/Ouranosinc/xclim/issues/1771
 - pycodestyle 
 - nc-time-axis
 - jq
@@ -128,7 +127,7 @@ dependencies:
 - panel
 - xrft
 - git
-- openmpi
+- openmpi==4.1.6
 - mpi4py
 - palettable
 - xlrd
@@ -278,6 +277,7 @@ dependencies:
 - shellcheck
 - pysteps
 - ucx-py
+- ucx==1.15.0
 - geocat-viz
 - icclim
 - py-cordex
@@ -290,5 +290,6 @@ dependencies:
 - regional-mom6
 - u8darts-all
 - xwrf
+- ecmwf-api-client
 - pip:
   - railroad-diagrams ### Unlisted dependency of pip and pyparsing

environments/analysis3/testconfig.yml

@@ -59,6 +59,7 @@ skip:
 - torch.onnx ### Prevent testing of _internal APIs
 - torch.testing ### Prevent testing of _internal APIs
 - torch.utils.benchmark ### Uses non-existent part of deprecated pkg_resources
+- keras.src.backend ### Don't test Keras backends
 
 # Preload these modules before testing to avoid weird python issues
 preload:

scripts/dev_prep.sh

@@ -158,7 +158,7 @@ _initialise() {
     echo "Copying external files"
     for f in "${outside_files_to_copy[@]}"; do
         mkdir -p "${OVERLAY_BASE}"/$( dirname "${f#/g/}" )
-        cp "${f}" "${OVERLAY_BASE}"/"${f#/g/}"
+        cp -r "${f}" "${OVERLAY_BASE}"/"${f#/g/}"
     done
 
     echo "Unsquashing unstable environment"