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feat: use latest VRS models #616

feat: use latest VRS models

feat: use latest VRS models #616

Workflow file for this run

name: checks
on: [push, pull_request]
jobs:
test:
name: test py${{ matrix.python-version }}
runs-on: ubuntu-latest
env:
AWS_ACCESS_KEY_ID: ${{ secrets.DUMMY_AWS_ACCESS_KEY_ID }}
AWS_SECRET_ACCESS_KEY: ${{ secrets.DUMMY_AWS_SECRET_ACCESS_KEY }}
AWS_DEFAULT_REGION: us-east-2
AWS_DEFAULT_OUTPUT: text
DISEASE_NORM_DB_URL: http://localhost:8002
THERAPY_NORM_DB_URL: http://localhost:8002
THERAPY_TEST: true
strategy:
matrix:
python-version: ["3.10", "3.11", "3.12"]
steps:
- uses: actions/checkout@v3
- name: Setup Python
uses: actions/setup-python@v4
with:
python-version: ${{ matrix.python-version }}
- name: Install dependencies
run: |
python3 -m pip install ".[etl,test]"
- name: Build local DynamoDB
run: |
chmod +x ./tests/scripts/dynamodb_run.sh
./tests/scripts/dynamodb_run.sh
- name: Run tests
run: python3 -m pytest
lint:
name: lint py${{ matrix.python-version }}
runs-on: ubuntu-latest
env:
AWS_ACCESS_KEY_ID: ${{ secrets.DUMMY_AWS_ACCESS_KEY_ID }}
AWS_SECRET_ACCESS_KEY: ${{ secrets.DUMMY_AWS_SECRET_ACCESS_KEY }}
AWS_DEFAULT_REGION: us-east-2
AWS_DEFAULT_OUTPUT: text
steps:
- uses: actions/checkout@v3
- name: Setup Python
uses: actions/setup-python@v4
with:
python-version: "3.11"
- name: Install dependencies
run: python3 -m pip install ".[dev]"
- name: Check style
run: python3 -m ruff check . && ruff format --check .