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feat!: update /search/studies endpoint #279

Merged
merged 50 commits into from
Mar 28, 2024
Merged

feat!: update /search/studies endpoint #279

merged 50 commits into from
Mar 28, 2024

Commits on Dec 20, 2023

  1. feat!: update database to reflect schema changes (#264) 

    * Update database nodes and relationships
  * Dropped Variation Group. We can add back in new issue if we want to retain this
* Update versions for disease-normalizer, civicpy, pydantic, and neo4j 
* Changed fixture scope in `tests/conftest.py` to `session`
    @korikuzma
    korikuzma committed Dec 20, 2023
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  2. fix: bugs in database code (#267) 

    * fix: typo in CODING_KEYS
* change: study now has alleleOrigin property with HAS_GENE_CONTEXT rel
    @korikuzma
    korikuzma authored Dec 20, 2023
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Commits on Jan 2, 2024

  1. feat: include type in nodes representing VRS objects (#268)

    @korikuzma
    korikuzma authored Jan 2, 2024
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Commits on Jan 3, 2024

  1. fix: db should include gene aliases (#275)

    @korikuzma
    korikuzma authored Jan 3, 2024
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  2. merge update-test-data

    @korikuzma
    korikuzma committed Jan 3, 2024
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  3. wip: store progress

    @korikuzma
    korikuzma committed Jan 3, 2024
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Commits on Jan 4, 2024

  1. add more tests

    @korikuzma
    korikuzma committed Jan 4, 2024
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  2. resolve deprecation warning for event loop redefined

    @korikuzma
    korikuzma committed Jan 4, 2024
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  3. cleanup

    @korikuzma
    korikuzma committed Jan 4, 2024
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  4. handle some exceptions

    @korikuzma
    korikuzma committed Jan 4, 2024
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  5. add tests for combo / sub therapies

    @korikuzma
    korikuzma committed Jan 4, 2024
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  6. more cleanup

    @korikuzma
    korikuzma committed Jan 4, 2024
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Commits on Jan 8, 2024

  1. tests: update civic + moa test data (#276) (#281) 

    * Updates civic + moa test data from 20240103
* Updated moa ids that changed
    @korikuzma
    korikuzma authored Jan 8, 2024
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Commits on Jan 9, 2024

  1. allow querying based on has_members rel + has_defining_context rel

    @korikuzma
    korikuzma committed Jan 9, 2024
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Commits on Mar 15, 2024

  1. Merge branch 'epic-231' into epic-231-db

    @korikuzma
    korikuzma committed Mar 15, 2024
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  2. test: update database to reflect normalizer_data in extensions

    @korikuzma
    korikuzma committed Mar 15, 2024
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Commits on Mar 22, 2024

  1. revert

    @korikuzma
    korikuzma committed Mar 22, 2024
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  2. Merge branch 'epic-231-db' into issue-273

    @korikuzma
    korikuzma committed Mar 22, 2024
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Commits on Mar 25, 2024

  1. update tests to reflect cdm changes

    @korikuzma
    korikuzma committed Mar 25, 2024
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  2. update deps + digests

    @korikuzma
    korikuzma committed Mar 25, 2024
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  3. Merge branch 'update-deps' into epic-231-db

    @korikuzma
    korikuzma committed Mar 25, 2024
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  4. update digests

    @korikuzma
    korikuzma committed Mar 25, 2024
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  5. Merge branch 'epic-231-db' into issue-273

    @korikuzma
    korikuzma committed Mar 25, 2024
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  6. Merge branch 'epic-231' into epic-231-db

    @korikuzma
    korikuzma committed Mar 25, 2024
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  7. Merge branch 'epic-231-db' into issue-273

    @korikuzma
    korikuzma committed Mar 25, 2024
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  8. update api to dump response

    @korikuzma
    korikuzma committed Mar 25, 2024
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  9. udpate LOC KEYS to incl digest

    @korikuzma
    korikuzma committed Mar 25, 2024
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  10. Merge branch 'epic-231-db' into issue-273

    @korikuzma
    korikuzma committed Mar 25, 2024
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  11. udpate digests

    @korikuzma
    korikuzma committed Mar 25, 2024
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  12. fix tests

    @korikuzma
    korikuzma committed Mar 25, 2024
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  13. Merge branch 'epic-231-db' into issue-273

    @korikuzma
    korikuzma committed Mar 25, 2024
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  14. test: update civicpy cache data 

    * 20240103 -> 20240325
    @korikuzma
    korikuzma committed Mar 25, 2024
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  15. Merge branch 'update-civicpy-cache' into epic-231-db

    @korikuzma
    korikuzma committed Mar 25, 2024
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  16. Merge branch 'epic-231-db' into issue-273

    @korikuzma
    korikuzma committed Mar 25, 2024
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Commits on Mar 26, 2024

  1. Merge branch 'epic-231' into epic-231-db

    @korikuzma
    korikuzma committed Mar 26, 2024
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  2. cleanup

    @korikuzma
    korikuzma committed Mar 26, 2024
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  3. cleanup secret

    @korikuzma
    korikuzma committed Mar 26, 2024
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  4. better name for catvar key

    @korikuzma
    korikuzma committed Mar 26, 2024
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  5. format

    @korikuzma
    korikuzma committed Mar 26, 2024
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  6. Merge branch 'epic-231-db' into issue-273

    @korikuzma
    korikuzma committed Mar 26, 2024
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Commits on Mar 27, 2024

  1. cleanup

    @korikuzma
    korikuzma committed Mar 27, 2024
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  2. Merge branch 'epic-231' into issue-273

    @korikuzma
    korikuzma committed Mar 27, 2024
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  3. fix: creating location parameterized query string 

    * start can be 0, so needed to do null check
    @korikuzma
    korikuzma committed Mar 27, 2024
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  4. Merge branch 'fix-db-keys' into issue-273

    @korikuzma
    korikuzma committed Mar 27, 2024
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  5. StrEnum -> str, Enum

    @korikuzma
    korikuzma committed Mar 27, 2024
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  6. Merge branch 'epic-231' into issue-273

    @korikuzma
    korikuzma committed Mar 27, 2024
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Commits on Mar 28, 2024

  1. resolve too-many-statements for _get_nested_study

    @korikuzma
    korikuzma committed Mar 28, 2024
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  2. move code block out of session block

    @korikuzma
    korikuzma committed Mar 28, 2024
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  3. docs

    @korikuzma
    korikuzma committed Mar 28, 2024
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  4. reorganize

    @korikuzma
    korikuzma committed Mar 28, 2024
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