Merge branch 'staging' into pyproject

Pipfile

@@ -21,6 +21,7 @@ pre-commit = "*"
 black = "*"
 ruff = "*"
 pytest-cov = "*"
+httpx = "*"
 mock = "*"
 ipykernel = "*"
 sphinx = "6.1.3"

tests/unit/test_endpoints.py

@@ -0,0 +1,43 @@
+"""Perform basic tests of endpoint branches.
+
+We already have tests and data validation to ensure correctness of the underlying
+response objects -- here, we're checking for bad branch logic and for basic assurances
+that routes integrate correctly with query methods.
+"""
+import pytest
+from fastapi.testclient import TestClient
+
+from gene.main import app
+
+
+@pytest.fixture(scope="module")
+def api_client():
+    """Provide test client fixture."""
+    return TestClient(app)
+
+
+def test_search(api_client):
+    """Test /search endpoint."""
+    response = api_client.get("/gene/search?q=braf")
+    assert response.status_code == 200
+    assert (
+        response.json()["source_matches"]["HGNC"]["records"][0]["concept_id"]
+        == "hgnc:1097"
+    )
+
+    response = api_client.get("/gene/search?q=braf&incl=sdkl")
+    assert response.status_code == 422
+
+
+def test_normalize(api_client):
+    """Test /normalize endpoint."""
+    response = api_client.get("/gene/normalize?q=braf")
+    assert response.status_code == 200
+    assert response.json()["normalized_id"] == "hgnc:1097"
+
+
+def test_normalize_unmerged(api_client):
+    """Test /normalize_unmerged endpoint."""
+    response = api_client.get("/gene/normalize_unmerged?q=braf")
+    assert response.status_code == 200
+    assert response.json()["normalized_concept_id"] == "hgnc:1097"