feat: update variable names with cool-seq-tool updates

cancervariants · Aug 20, 2024 · b2c6787 · b2c6787
1 parent fbe0a83
commit b2c6787
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Showing 3 changed files with 6 additions and 8 deletions.
diff --git a/client/src/components/Pages/Summary/Main/Summary.tsx b/client/src/components/Pages/Summary/Main/Summary.tsx
@@ -162,8 +162,6 @@ export const Summary: React.FC<Props> = ({ setVisibleTab }) => {
     setFormattedFusion(formattedFusion);
   }, [fusion]);
 
-  console.log(formattedFusion);
-
   return (
     <>
       {(!validationErrors || validationErrors.length === 0) &&

diff --git a/server/src/curfu/routers/constructors.py b/server/src/curfu/routers/constructors.py
@@ -110,8 +110,8 @@ async def build_tx_segment_gct(
         tx_to_genomic_coords=False,
         transcript=parse_identifier(transcript),
         chromosome=parse_identifier(chromosome),
-        genomic_start=start,
-        genomic_end=end,
+        seg_start_genomic=start,
+        seg_end_genomic=end,
     )
     return TxSegmentElementResponse(element=tx_segment, warnings=warnings)
 
@@ -146,8 +146,8 @@ async def build_tx_segment_gcg(
         tx_to_genomic_coords=False,
         gene=gene,
         chromosome=parse_identifier(chromosome),
-        genomic_start=start,
-        genomic_end=end,
+        seg_start_genomic=start,
+        seg_end_genomic=end,
     )
     return TxSegmentElementResponse(element=tx_segment, warnings=warnings)
 

diff --git a/server/src/curfu/routers/utilities.py b/server/src/curfu/routers/utilities.py
@@ -159,8 +159,8 @@ async def get_exon_coords(
 
     response = await request.app.state.fusor.cool_seq_tool.ex_g_coords_mapper.genomic_to_tx_segment(
         genomic_ac=chromosome,
-        genomic_start=start,
-        genomic_end=end,
+        seg_start_genomic=start,
+        seg_end_genomic=end,
         transcript=transcript,
         gene=gene,
     )