2024q1

Changes since 2022q2:

• based on cBioPortal 6.0.4

New:

• Add PM4Onco branding
• Added tool MtbImporter
• Add support for data access tokens
• Detailed installation instructions
• Add Evidence level descriptions
• Extend evidence level input

Enhancements:

• Update to cBioPortal 6.0.4
• Update to Postgres 16.X
• Update to MariaDB 11.X
• Update to MongoDB 4.2
• Update HAPI to 7.0.2
• Switch to more responsive Tomcat version of HAPI FHIR
• Update Ensembl to 111
• Fix glitching tabs in patient view
• Migrate cBioPortal auth from SAML to OAuth2/OIDC
• Improve Keycloak instructions
• Fix dumpPortalInfo.sh not executable
• Several fixes in ClinicalTrialMatch
• Improve support for self-signed certificates / local CAs

2022q2

Changes since 2021q4:

• based on cBioPortal 4.1.13

New:

• Attribute ORDER_ID added to transfer the order number to the HIS more easily
• Display of the imported patient name
• Enhanced support for custom certificates
• MtbImporter / MtbExporter
• Follow-Up tab
• Use of MII-compatible FHIR profiles for storing therapy recommendations

Enhancements:

• Evidence level extended by additional references
• Refactoring study search
  • Clearer interface based on evaluation feedback
  • Simplified input for text fields
  • Better description of recruitment status
  • Selection of country groups
  • Explicit search for tumor entity
• Refactor MTB
  • Clearer interface based on evaluation feedback
  • Combination login cBioPortal & MTB
  • Clinical trials from the study search and ClinicalTrials.gov as recommendations
  • Reuse of old therapy recommendations

2021q4

Changes since 2021q1:

• based on cBioPortal 3.7.20

New:

• Integration of the PDF-report of MIRACUM-Pipe
• Integration of mutational signatures
• Integration of LoH-Mutationen
• Mutational signatures selectable in therapy recommendation
• Upgrade to latest seed database (2.12.8)
• Option for a corporate logo on the upper right corner
• Formatting of clinical attributes through HTML
• Offline-integration of MutationAssessor-Annotations in Genome-Nexus
• Support for Strings >255 chars in clinical attributes
• Adding additional attributes to patient header

Enhancements:

• Enhanced compatibility of therapy recommendation with macOS Safari
• Displaying EMA approval status for drugs
• Compatibility with HTTPS und proxys
• Resolved installation issues
• Integration of the cbpManager
• Update Log4j
• Display of german special characters
• Simplified upgrading the Postgres-database

2021q1

Merge pull request #73 from buschlab/renovate/docker-alpine-3.x