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@arjunrajlaboratory

Arjun Raj's systems biology lab

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  1. DeepTile DeepTile Public

    Large image tiling and stitching library for scaling Python functions to arbitrary input image sizes.

    Python 10

  2. ProbeDesign ProbeDesign Public

    MATLAB 4 3

  3. rajlabimagetools rajlabimagetools Public

    MATLAB 2 4

  4. organoids2 organoids2 Public

    MATLAB 1

  5. atac-seq_pipeline_paired-end atac-seq_pipeline_paired-end Public

    Slightly customized version of the ENCODE ATAC-seq v1 pipeline. Made to run on Penn's high performance cluster (PMACS). The ENCODE ATAC-Seq pipeline v1 specifications are listed in this google doc:…

    Python 1

  6. NetworkModeling_RareCellVariability_Code NetworkModeling_RareCellVariability_Code Public

    Code corresponding to paper 'Gene networks with transcriptional bursting recapitulate rare transient coordinated high expression states in cancer'

    MATLAB 1

Repositories

Showing 10 of 44 repositories
  • ImageAnalysisProject Public
    arjunrajlaboratory/ImageAnalysisProject’s past year of commit activity
    Python 0 1 0 0 Updated Sep 29, 2024
  • segment-anything-2-nimbus Public Forked from facebookresearch/segment-anything-2

    The repository provides code for running inference with the Meta Segment Anything Model 2 (SAM 2), links for downloading the trained model checkpoints, and example notebooks that show how to use the model.

    arjunrajlaboratory/segment-anything-2-nimbus’s past year of commit activity
    Jupyter Notebook 0 Apache-2.0 944 0 0 Updated Sep 19, 2024
  • NimbusImageChatbot Public
    arjunrajlaboratory/NimbusImageChatbot’s past year of commit activity
    Vue 0 Apache-2.0 0 0 0 Updated Aug 25, 2024
  • ProbeDesign Public
    arjunrajlaboratory/ProbeDesign’s past year of commit activity
    MATLAB 4 3 1 2 Updated Aug 21, 2024
  • SGanalysis Public

    Analysis for Spatial Genomics GenePS data

    arjunrajlaboratory/SGanalysis’s past year of commit activity
    Python 1 Apache-2.0 1 0 0 Updated Aug 5, 2024
  • nimbus_sandboxes Public
    arjunrajlaboratory/nimbus_sandboxes’s past year of commit activity
    Jupyter Notebook 0 GPL-3.0 0 0 0 Updated Jul 3, 2024
  • process_incucyte_tiff_data Public
    arjunrajlaboratory/process_incucyte_tiff_data’s past year of commit activity
    Python 0 Apache-2.0 0 3 0 Updated May 1, 2024
  • DeepTile Public

    Large image tiling and stitching library for scaling Python functions to arbitrary input image sizes.

    arjunrajlaboratory/DeepTile’s past year of commit activity
    Python 10 MIT 0 0 0 Updated Apr 3, 2024
  • iPSC_Rewind Public
    arjunrajlaboratory/iPSC_Rewind’s past year of commit activity
    R 0 MIT 0 0 0 Updated Jan 8, 2024
  • combine-ome-tiff Public

    Combines files spread across multiple OME TIFFs into a single TIFF

    arjunrajlaboratory/combine-ome-tiff’s past year of commit activity
    Python 0 Apache-2.0 0 0 0 Updated Dec 13, 2023
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